Evidence map›Paper›PMID 31998300›Full record

SynthesisFrontiers in immunology2019

Distribution of Bacterial α1,3-Galactosyltransferase Genes in the Human Gut Microbiome.

Emmanuel Montassier, Gabriel A Al-Ghalith, Camille Mathé, Quentin Le Bastard, Venceslas Douillard, Abel Garnier, Rémi Guimon, Bastien Raimondeau, Yann Touchefeu, Emilie Duchalais and 7 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Frontiers in immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Review
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  8. Review
  9. Exploring the relationship betweenComputational and structural biotechnology journal · 2024
    Review
  10. Review
  11. Review
  12. Review
  13. Article
  14. The role of glycosylation in clinical allergy and immunology.The Journal of allergy and clinical immunology · 2024
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Recently EvolvedFrontiers in cellular and infection microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Emmanuel MontassierMicrobiota Hosts Antibiotics and bacterial Resistances (MiHAR), Université de Nantes, Nantes, France.
Gabriel A Al-GhalithBioinformatics and Computational Biology, University of Minnesota, Minneapolis, MN, United States.
Camille MathéCentre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France.
Quentin Le BastardMicrobiota Hosts Antibiotics and bacterial Resistances (MiHAR), Université de Nantes, Nantes, France.
Venceslas DouillardCentre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France.
Abel GarnierCentre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France.
Rémi GuimonCentre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France.
Bastien RaimondeauCentre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France.
Yann TouchefeuInstitut des Maladies de l'Appareil Digestif, CHU Nantes, Nantes, France.
Emilie DuchalaisInstitut des Maladies de l'Appareil Digestif, CHU Nantes, Nantes, France.
Nicolas VinceCentre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France.
Sophie LimouCentre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France.
Pierre-Antoine GourraudCentre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France.
David A LaplaudCentre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France.
Arnaud B NicotCentre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France.
Jean-Paul SoulillouCentre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France.
Laureline BerthelotCentre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France.
Inserm · FRNantes Université · FRCentre Hospitalier Universitaire de Nantes · FRInstitut de Transplantation Urologie en Nephrologie · FRUniversity of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Because of a loss-of-function mutation in the GGTA1 gene, humans are unable to synthetize α1,3-Galactose (Gal) decorated glycans and develop high levels of circulating anti-α1,3-Galactose antibodies (anti-Gal Abs). Anti-Gal Abs have been identified as a major obstacle of organ xenotransplantation and play a role in several host-pathogen relationships including potential susceptibility to infection. Anti-Gal Abs are supposed to stem from immunization against the gut microbiota, an assumption derived from the observation that some pathogens display α1,3-Gal and that antibiotic treatment decreases the level of anti-Gal. However, there is little information to date concerning the microorganisms producing α1,3-Gal in the human gut microbiome. Here, available α1,3-Galactosyltransferase (GT) gene sequences from gut bacteria were selectively quantified for the first time in the gut microbiome shotgun sequences of 163 adult individuals from three published population-based metagenomics analyses. We showed that most of the gut microbiome of adult individuals contained a small set of bacteria bearing α1,3-GT genes. These bacteria belong mainly to the Enterobacteriaceae family, including

Indexed as

Gastrointestinal MicrobiomeBacteriaGalactosyltransferasesHumansMetagenomicsMicrobiotaOpen Reading FramesPhylogenyGalactosyltransferasesN-acetyllactosaminide alpha-1,3-galactosyltransferaseenterobacteriaceaeintestinal microbiomeshotgun dataα1,3-Galactosyltransferaseα1,3-Gal antigen

Identifiers

PMID31998300
PMCPMC6970434
OpenAlexW2999232642

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.