Evidence map›Paper›PMID 31996133›Full record

ArticleBMC plant biology2020

Genome-wide identification and expression of GRAS gene family members in cassava.

Zhongying Shan, Xinglu Luo, Meiyan Wu, Limei Wei, Zhupeng Fan, Yanmei Zhu

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
17.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 74 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Zhongying ShanAgricultural College, Guangxi University, Nanning, 530005, China.
Xinglu LuoAgricultural College, Guangxi University, Nanning, 530005, China. luoxinglu@sina.com.
Meiyan WuAgricultural College, Guangxi University, Nanning, 530005, China.
Limei WeiAgricultural College, Guangxi University, Nanning, 530005, China.
Zhupeng FanAgricultural College, Guangxi University, Nanning, 530005, China.
Yanmei ZhuAgricultural College, Guangxi University, Nanning, 530005, China.
Guangxi University · CNDezhou University · CN

Funding

Guangxi Science and Technology Plan Project 2018AB46010State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources Independent Research Project SKLCUSA-a201802State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources Open Project SKLCOSA-b201609State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources Open Project SKLCUSA-b201704
6 · The paper itself

Abstract

backgroundCassava is highly tolerant to stressful conditions, especially drought stress conditions; however, the mechanisms underlying this tolerance are poorly understood. The GRAS gene family is a large family of transcription factors that are involved in regulating the growth, development, and stress responses of plants. Currently, GRAS transcription factors have not been systematically studied in cassava, which is the sixth most important crop in the world.

resultsSeventy-seven MeGRAS genes were identified from the cassava genome database. Phylogenetic analysis revealed that the MeGRAS proteins could be divided into 14 subfamilies. The gene structure and motif compositions of the proteins were considerably conserved within the same subfamily. Duplication events, particularly segmental duplication, were identified as the main driving force for GRAS gene expansion in cassava. Global expression analysis revealed that MeGRAS genes exhibited similar or distinct expression profiles within different tissues among different varieties. Moreover, qRT-PCR analysis revealed the expression patterns of MeGRAS genes in response to abiotic stress (drought, salt, cold, and H

conclusionThis study is the first to provide comprehensive information on GRAS gene family members in cassava. The data will increase our understanding of both the molecular basis and the effects of GRAS genes. In addition, the results will contribute further to identifying the responses to various environmental conditions and provide insights into the potential functions of GRAS genes.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantGenome, PlantManihotPhylogenyPlant ProteinsStress, PhysiologicalTranscription FactorsPlant ProteinsTranscription FactorsAbiotic stressCassavaGene expressionGRAS genes

Identifiers

PMID31996133
PMCPMC6990482
OpenAlexW3008294961

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.