Evidence map›Paper›PMID 31996127›Full record

ArticleBMC genomics2020

Comprehensive analysis of the Gossypium hirsutum L. respiratory burst oxidase homolog (Ghrboh) gene family.

Wei Wang, Dongdong Chen, Dan Liu, Yingying Cheng, Xiaopei Zhang, Lirong Song, Mengjiao Hu, Jie Dong, Fafu Shen

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Genome Wide Identification ofInternational journal of molecular sciences · 2022
    Article
  13. Identification ofFrontiers in plant science · 2022
    Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Wei WangState Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, NO. 61 Daizong Street, Tai'an, Shandong, 271018, People's Republic of China.
Dongdong ChenState Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, NO. 61 Daizong Street, Tai'an, Shandong, 271018, People's Republic of China.
Dan LiuState Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, NO. 61 Daizong Street, Tai'an, Shandong, 271018, People's Republic of China.
Yingying ChengState Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, NO. 61 Daizong Street, Tai'an, Shandong, 271018, People's Republic of China.
Xiaopei ZhangState Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, NO. 61 Daizong Street, Tai'an, Shandong, 271018, People's Republic of China.
Lirong SongState Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, NO. 61 Daizong Street, Tai'an, Shandong, 271018, People's Republic of China.
Mengjiao HuState Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, NO. 61 Daizong Street, Tai'an, Shandong, 271018, People's Republic of China.
Jie DongState Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, NO. 61 Daizong Street, Tai'an, Shandong, 271018, People's Republic of China.
Fafu ShenState Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, NO. 61 Daizong Street, Tai'an, Shandong, 271018, People's Republic of China. cotton1@sdau.edu.cn.ORCID http://orcid.org/0000-0003-1977-8712
Shandong Agricultural University · CN

Funding

China Major Projects for Transgenic Breeding 2016ZX08005-004National Key R&D Program of China 2018YFD0100303
6 · The paper itself

Abstract

backgroundPlant NADPH oxidase (NOX), also known as respiratory burst oxidase homolog (rboh), encoded by the rboh gene, is a key enzyme in the reactive oxygen species (ROS) metabolic network. It catalyzes the formation of the superoxide anion (O

resultsIn the present study, 26 putative Ghrboh genes were identified and characterized. They were phylogenetically classified into six subfamilies and distributed at different densities across 18 of the 26 chromosomes or scaffolds. Their exon-intron structures, conserved domains, synteny and collinearity, gene family evolution, regulation mediated by cis-acting elements and microRNAs (miRNAs) were predicted and analyzed. Additionally, expression profiles of Ghrboh gene family were analyzed in different tissues/organs and at different developmental stages and under different abiotic stresses, using RNA-Seq data and real-time PCR. These profiling studies indicated that the Ghrboh genes exhibited temporal and spatial specificity with respect to expression, and might play important roles in cotton development and in stress tolerance through modulating NOX-dependent ROS induction and other signaling pathways.

conclusionsThis comprehensive analysis of the characteristics of the Ghrboh gene family determined features such as sequence, synteny and collinearity, phylogenetic and evolutionary relationship, expression patterns, and cis-element- and miRNA-mediated regulation of gene expression. Our results will provide valuable information to help with further gene cloning, evolutionary analysis, and biological function analysis of cotton rbohs.

Indexed as

Genome, PlantGenomicsMultigene FamilyComputational BiologyEvolution, MolecularGene Expression Regulation, PlantGenes, PlantGossypiumHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationNADPH OxidasesPhylogenyPromoter Regions, GeneticReactive Oxygen SpeciesRegulatory Sequences, Nucleic AcidStress, PhysiologicalNADPH OxidasesReactive Oxygen Speciessuperoxide-forming enzymeExpression patternsGene familyRbohReactive oxygen speciesUpland cotton

Identifiers

PMID31996127
PMCPMC6988335
OpenAlexW3013406874

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.