Evidence map›Paper›PMID 31995648›Full record

ArticleMolecular ecology2020

Genomic patterns in the widespread Eurasian lynx shaped by Late Quaternary climatic fluctuations and anthropogenic impacts.

Maria Lucena-Perez, Elena Marmesat, Daniel Kleinman-Ruiz, Begoña Martínez-Cruz, Karolina Węcek, Alexander P Saveljev, Ivan V Seryodkin, Innokentiy Okhlopkov, Mikhail G Dvornikov, Janis Ozolins and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular ecology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 57 citations in OpenAlex.

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  12. Phylogenetic History and Phylogeographic Patterns of the European Wildcat (Animals : an open access journal from MDPI · 2023
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  16. Purging of deleterious burden in the endangered Iberian lynx.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 6 countries.

Maria Lucena-PerezDepartment of Integrative Ecology, Estación Biológica de Doñana (CSIC), Seville, Spain.ORCID 0000-0002-9676-7155
Elena MarmesatDepartment of Integrative Ecology, Estación Biológica de Doñana (CSIC), Seville, Spain.
Daniel Kleinman-RuizDepartment of Integrative Ecology, Estación Biológica de Doñana (CSIC), Seville, Spain.
Begoña Martínez-CruzSchool of Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, UK.
Karolina WęcekMammal Research Institute, Polish Academy of Sciences, Białowieża, Poland.
Alexander P SaveljevDepartment of Animal Ecology, Russian Research Institute of Game Management and Fur Farming, Kirov, Russia.
Ivan V SeryodkinLaboratory of Ecology and Conservation of Animals, Pacific Institute of Geography of Far East Branch of Russian Academy of Sciences, Vladivostok, Russia.
Innokentiy OkhlopkovInstitute for Biological Problems of Cryolithozone, Siberian Division of the Russian Academy of Sciences, Yakutsk, Russia.
Mikhail G DvornikovDepartment of Hunting Resources, Russian Research Institute of Game Management and Fur Farming, Kirov, Russia.
Janis OzolinsDepartment of Hunting and Wildlife Management, Latvijas Valsts mežzinātnes institūts "Silava", Salaspils, Latvia.
Naranbaatar GalsandorjInstitute of General and Experimental Biology, Mongolian Academy of Science, Ulaanbaatar, Mongolia.
Milan PaunovicNatural History Museum, Belgrade, Serbia.
Mirosław RatkiewiczInstitute of Biology, University of Białystok, Białystok, Poland.
Krzysztof SchmidtMammal Research Institute, Polish Academy of Sciences, Białowieża, Poland.
José A GodoyDepartment of Integrative Ecology, Estación Biológica de Doñana (CSIC), Seville, Spain.ORCID 0000-0001-7502-9471
Estación Biológica de Doñana · ESMammal Research Institute · PLFar Eastern Federal University · RUKirov State Medical Academy · RULatvian State Forest Research Institute "Silava" · LVLiverpool John Moores University · GBLomonosov Moscow State University · RUMongolian Academy of Sciences · MNRussian Academy of Sciences · RUUniversity of Białystok · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Disentangling the contribution of long-term evolutionary processes and recent anthropogenic impacts to current genetic patterns of wildlife species is key to assessing genetic risks and designing conservation strategies. Here, we used 80 whole nuclear genomes and 96 mitogenomes from populations of the Eurasian lynx covering a range of conservation statuses, climatic zones and subspecies across Eurasia to infer the demographic history, reconstruct genetic patterns, and discuss the influence of long-term isolation and/or more recent human-driven changes. Our results show that Eurasian lynx populations shared a common history until 100,000 years ago, when Asian and European populations started to diverge and both entered a period of continuous and widespread decline, with western populations, except Kirov, maintaining lower effective sizes than eastern populations. Population declines and increased isolation in more recent times probably drove the genetic differentiation between geographically and ecologically close westernmost European populations. By contrast, and despite the wide range of habitats covered, populations are quite homogeneous genetically across the Asian range, showing a pattern of isolation by distance and providing little genetic support for the several proposed subspecies. Mitogenomic and nuclear divergences and population declines starting during the Late Pleistocene can be mostly attributed to climatic fluctuations and early human influence, but the widespread and sustained decline since the Holocene is more probably the consequence of anthropogenic impacts which intensified in recent centuries, especially in western Europe. Genetic erosion in isolated European populations and lack of evidence for long-term isolation argue for the restoration of lost population connectivity.

Indexed as

Biological EvolutionGenomicsAnimalsDNA, MitochondrialEcosystemEndangered SpeciesEuropeGenetic DriftGenomeHumansLynxPhylogenySequence Analysis, DNADNA, MitochondrialcarnivoreEurasian lynxLynx lynxmitogenomesphylogeographypopulation genomics

Identifiers

PMID31995648
PMCPMC7064982
OpenAlexW3003387343

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.