Evidence map›Paper›PMID 31995579›Full record

ArticlePloS one2020

Impact of posttranslational modifications on atomistic structure of fibrinogen.

Žofie Sovová, Jana Štikarová, Jiřina Kaufmanová, Pavel Májek, Jiří Suttnar, Pavel Šácha, Martin Malý, Jan E Dyr

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Fibrin as a Versatile Fibrous Biopolymer.Sub-cellular biochemistry · 2026
    Review
  3. Review
  4. Homocysteinylation of Fibrinogen: A Post-Translational Link to Thrombosis.International journal of molecular sciences · 2025
    Review
  5. Review
  6. Review
  7. Review
  8. Review
  9. The Effects ofAntioxidants (Basel, Switzerland) · 2021
    Article
  10. Article
  11. Fibrin Clot Formation under Oxidative Stress Conditions.Antioxidants (Basel, Switzerland) · 2021
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Žofie SovováDepartment of Biochemistry, Institute of Hematology and Blood Transfusion, Prague, Czech Republic.ORCID 0000-0003-3337-321X
Jana ŠtikarováDepartment of Biochemistry, Institute of Hematology and Blood Transfusion, Prague, Czech Republic.
Jiřina KaufmanováDepartment of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Czech Republic.ORCID 0000-0003-0337-8204
Pavel MájekDepartment of Biochemistry, Institute of Hematology and Blood Transfusion, Prague, Czech Republic.
Jiří SuttnarDepartment of Biochemistry, Institute of Hematology and Blood Transfusion, Prague, Czech Republic.
Pavel ŠáchaProteases of Human Pathogens, Institute of Organic Chemistry and Biochemistry ASCR, v.v.i., Prague, Czech Republic.
Martin MalýMilitary University Hospital, Charles University in Prague, Prague, Czech Republic.
Jan E DyrDepartment of Biochemistry, Institute of Hematology and Blood Transfusion, Prague, Czech Republic.
Institute of Haematology and Blood Transfusion · CZCharles University · CZCzech Academy of Sciences, Institute of Organic Chemistry and Biochemistry · CZUniversity of Chemistry and Technology, Prague · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oxidative stress in humans is related to various pathophysiological processes, which can manifest in numerous diseases including cancer, cardiovascular diseases, and Alzheimer's disease. On the atomistic level, oxidative stress causes posttranslational modifications, thus inducing structural and functional changes into the proteins structure. This study focuses on fibrinogen, a blood plasma protein that is frequently targeted by reagents causing posttranslational modifications in proteins. Fibrinogen was in vitro modified by three reagents, namely sodium hypochlorite, malondialdehyde, and 3-morpholinosydnonimine that mimic the oxidative stress in diseases. Newly induced posttranslational modifications were detected via mass spectrometry. Electron microscopy was used to visualize changes in the fibrin networks, which highlight the extent of disturbances in fibrinogen behavior after exposure to reagents. We used molecular dynamics simulations to observe the impact of selected posttranslational modifications on the fibrinogen structure at the atomistic level. In total, 154 posttranslational modifications were identified, 84 of them were in fibrinogen treated with hypochlorite, 51 resulted from a reaction of fibrinogen with malondialdehyde, and 19 were caused by 3-morpholinosydnonimine. Our data reveal that the stronger reagents induce more posttranslational modifications in the fibrinogen structure than the weaker ones, and they extensively alter the architecture of the fibrin network. Molecular dynamics simulations revealed that the effect of posttranslational modifications on fibrinogen secondary structure varies from negligible alternations to serious disruptions. Among the serious disruptions is the oxidation of γR375 resulting in the release of Ca2+ ion that is necessary for appropriate fibrin fiber formation. Folding of amino acids γE72-γN77 into a short α-helix is a result of oxidation of γP76 to glutamic acid. The study describes behaviour of fibrinogen coiled-coil connecter in the vicinity of plasmin and hementin cleavage sites.

Indexed as

Protein Processing, Post-TranslationalFibrinogenHumansMolecular Dynamics SimulationProtein Structure, SecondaryFibrinogen

Identifiers

PMID31995579
PMCPMC6988951
OpenAlexW3003281674

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.