Evidence map›Paper›PMID 31995030›Full record

ArticleeLife2020

Notochord vacuoles absorb compressive bone growth during zebrafish spine formation.

Jennifer Bagwell, James Norman, Kathryn Ellis, Brianna Peskin, James Hwang, Xiaoyan Ge, Stacy V Nguyen, Sarah K McMenamin, Didier Yr Stainier, Michel Bagnat

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 62 citations in OpenAlex.

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  14. Standardization of bone morphometry and mineral density assessments in zebrafish and other small laboratory fishes using X-ray radiography and micro-computed tomography.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Jennifer BagwellDepartment of Cell Biology, Duke University, Durham, United States.ORCID 0000-0002-8873-0897
James NormanDepartment of Cell Biology, Duke University, Durham, United States.
Kathryn EllisDepartment of Cell Biology, Duke University, Durham, United States.
Brianna PeskinDepartment of Cell Biology, Duke University, Durham, United States.
James HwangDepartment of Cell Biology, Duke University, Durham, United States.
Xiaoyan GeDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, United States.
Stacy V NguyenBiology Department, Boston College, Boston, United States.ORCID 0000-0002-2641-3984
Sarah K McMenaminBiology Department, Boston College, Boston, United States.ORCID 0000-0002-1154-5810
Didier Yr StainierDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, United States.ORCID 0000-0002-0382-0026
Michel BagnatDepartment of Cell Biology, Duke University, Durham, United States.ORCID 0000-0002-3829-0168
Duke University · USBoston College · USUniversity of California, San Francisco · US

Funding

Training Program in Developmental & Stem Cell BiologyT32HD040372 · NICHD · DUKE UNIVERSITY · PI Terry H Lechler · 2001 to 2026
$8.9M
MOLECULAR GENETICS OF CARDIAC CELL DIFFERENTIATIONR01HL054737 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI COUGHLIN, SHAUN R. · 1996 to 2015
$5.4M
Uncovering mechanisms controlling notochord vacuole and spine morphogenesisR01AR065439 · NIAMS · DUKE UNIVERSITY · PI BAGNAT, MICHEL · 2013 to 2017
$1.7M
Mechanisms of vertebrate post-embryonic developmental progressionR00GM105874 · NIGMS · UNIVERSITY OF MASSACHUSETTS LOWELL · PI MCMENAMIN, SARAH KELLY · 2016 to 2018
$747k
Lightsheet Imaging SystemS10OD020010 · OD · DUKE UNIVERSITY · PI CAMERON, LISA A. · 2016 to 2016
$597k
Developmental pathways of thyroid hormone in sculpting the craniofacial skeletonR03HD091634 · NICHD · BOSTON COLLEGE · PI HERNANDEZ, LUZ PATRICIA, MCMENAMIN, SARAH KELLY · 2017 to 2018
$167k
NHLBI NIH HHS R01 HL054737NIAMS NIH HHS R01 AR065439NICHD NIH HHS R03 HD091634NIGMS NIH HHS R00 GM105874NIH HHS S10 OD020010
6 · The paper itself

Abstract

The vertebral column or spine assembles around the notochord rod which contains a core made of large vacuolated cells. Each vacuolated cell possesses a single fluid-filled vacuole, and loss or fragmentation of these vacuoles in zebrafish leads to spine kinking. Here, we identified a mutation in the kinase gene

Indexed as

AnimalsGene Expression Regulation, DevelopmentalMutationNotochordReceptor-Interacting Protein Serine-Threonine KinasesSpineVacuolesZebrafishZebrafish ProteinsReceptor-Interacting Protein Serine-Threonine KinasesZebrafish Proteinscell biologydevelopmental biologydstyknotochordscoliosisspinevacuolated cellsvertebrazebrafish

Identifiers

PMID31995030
PMCPMC7012607
OpenAlexW3003837958

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.