Evidence map›Paper›PMID 31994864›Full record

ArticleACS chemical biology2020

Efficient Site-Specific Prokaryotic and Eukaryotic Incorporation of Halotyrosine Amino Acids into Proteins.

Hyo Sang Jang, Xiaodong Gu, Richard B Cooley, Joseph J Porter, Rachel L Henson, Taylor Willi, Joseph A DiDonato, Stanley L Hazen, Ryan A Mehl

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Design of a halogen bond catalyzed DNA endonuclease.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Generating EfficientACS chemical biology · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Genetic-Code-Expansion Strategies for Vaccine Development.Chembiochem : a European journal of chemical biology · 2020
    Review
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Hyo Sang JangDepartment of Biochemistry and Biophysics , Oregon State University , Corvallis , Oregon 97331 , United States.ORCID 0000-0003-0460-9924
Xiaodong GuDepartment of Cardiovascular & Metabolic Sciences , Lerner Research Institute, Cleveland Clinic , Cleveland , Ohio 44195 , United States.
Richard B CooleyDepartment of Biochemistry and Biophysics , Oregon State University , Corvallis , Oregon 97331 , United States.ORCID 0000-0003-3928-2757
Joseph J PorterDepartment of Biochemistry and Biophysics , Oregon State University , Corvallis , Oregon 97331 , United States.
Rachel L HensonDepartment of Biochemistry and Biophysics , Oregon State University , Corvallis , Oregon 97331 , United States.
Taylor WilliDepartment of Biochemistry and Biophysics , Oregon State University , Corvallis , Oregon 97331 , United States.
Joseph A DiDonatoDepartment of Cardiovascular & Metabolic Sciences , Lerner Research Institute, Cleveland Clinic , Cleveland , Ohio 44195 , United States.
Stanley L HazenDepartment of Cardiovascular & Metabolic Sciences , Lerner Research Institute, Cleveland Clinic , Cleveland , Ohio 44195 , United States.
Ryan A MehlDepartment of Biochemistry and Biophysics , Oregon State University , Corvallis , Oregon 97331 , United States.ORCID 0000-0003-2932-4941
Oregon State University · USCleveland Clinic Lerner College of Medicine · USCleveland Clinic · US

Funding

Structural Determinants Of Ceruloplasmin Inflammatory ActivityP01HL076491 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI PLOW, EDWARD FRANKLIN · 2004 to 2019
$27.3M
HDL Structure, Function and DysfunctionR01HL128300 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI HAZEN, STANLEY L · 2016 to 2019
$3.1M
Equipment supplement: Defining Roles Of NitroTyrosine In Disease Via Genetic Code ExpansionR01GM114653 · NIGMS · OREGON STATE UNIVERSITY · PI MEHL, RYAN A · 2015 to 2024
$2.6M
Development of an improved core technology for efficient genetic code expansion in biomedical researchR01GM131168 · NIGMS · OREGON STATE UNIVERSITY · PI MEHL, RYAN A · 2019 to 2021
$1.1M
AB/SCIEX QTrap 6500 Mass Spectrometer Metabolic profiling systemS10OD016346 · OD · CLEVELAND CLINIC LERNER COM-CWRU · PI DIDONATO, JOSEPH · 2014 to 2014
$600k
NHLBI NIH HHS P01 HL076491NHLBI NIH HHS R01 HL128300NIGMS NIH HHS R01 GM114653NIGMS NIH HHS R01 GM131168NIH HHS S10 OD016346
6 · The paper itself

Abstract

Post-translational modifications (PTMs) of protein tyrosine (Tyr) residues can serve as a molecular fingerprint of exposure to distinct oxidative pathways and are observed in abnormally high abundance in the majority of human inflammatory pathologies. Reactive oxidants generated during inflammation include hypohalous acids and nitric oxide-derived oxidants, which oxidatively modify protein Tyr residues via halogenation and nitration, respectively, forming 3-chloroTyr, 3-bromoTyr, and 3-nitroTyr. Traditional methods for generating oxidized or halogenated proteins involve nonspecific chemical reactions that result in complex protein mixtures, making it difficult to ascribe observed functional changes to a site-specific PTM or to generate antibodies sensitive to site-specific oxidative PTMs. To overcome these challenges, we generated a system to efficiently and site-specifically incorporate chloroTyr, bromoTyr, and iodoTyr, and to a lesser extent nitroTyr, into proteins in both bacterial and eukaryotic expression systems, relying on a novel amber stop codon-suppressing mutant synthetase (haloTyrRS)/tRNA pair derived from the

Indexed as

Archaeal ProteinsAryldialkylphosphataseCatalysisEscherichia coliGreen Fluorescent ProteinsHEK293 CellsHumansMethanosarcina barkeriOxidation-ReductionProtein EngineeringProtein Processing, Post-TranslationalRNA, Transfer, TyrTyrosineTyrosine-tRNA LigaseArchaeal ProteinsAryldialkylphosphataseGreen Fluorescent ProteinsPON1 protein, humanRNA, Transfer, TyrTyrosineTyrosine-tRNA Ligase

Identifiers

PMID31994864
PMCPMC7207724
OpenAlexW3003515888

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.