Evidence map›Paper›PMID 31993730›Full record

ArticlePlant cell reports2020

Genome-wide transcriptional response of papain-like cysteine protease-mediated resistance against Xanthomonas oryzae pv. oryzae in rice.

Marjohn C Niño, Kwon Kyoo Kang, Yong-Gu Cho

Abstract read
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In one paragraph

Article in Plant cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
5.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
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  4. Papain-like cysteine proteases inFrontiers in plant science · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Marjohn C NiñoDepartment of Crop Science, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Kwon Kyoo KangDepartment of Horticulture, Hankyong National University, Anseong, 17579, Republic of Korea. kykang@hknu.ac.kr.
Yong-Gu ChoDepartment of Crop Science, Chungbuk National University, Cheongju, 28644, Republic of Korea. ygcho@cbnu.ac.kr.ORCID http://orcid.org/0000-0003-3213-6669
Chungbuk National University · KRHankyong National University · KR

Funding

Next-Generation BioGreen 21 Program (The Agricultural Genome Center), Rural Development Administration, Republic of Korea PJ01330201
6 · The paper itself

Abstract

key messageTransgenic rice overexpressing PLCP attenuated the virulence of Xanthomonas oryzae pv. oryzae through extensive activation of transduction signal and transcription activities that orchestrate downstream responses including the biosynthesis of secondary metabolites and up-regulation of several pathogenesis-related proteins. High-throughput transcriptome investigations of plant immunity highlight the complexity of gene networks leading to incompatible interaction with the pathogen. Accumulating findings implicate papain-like cysteine proteases (PLCPs) as a central hub in plant defense. While diverse roles of PLCPs in different pathosystems have become more evident, information on gene networks and signaling pathways necessary to orchestrate downstream responses are lacking. To understand the biological significance of cysteine protease against Xanthomonas oryzae pv. oryzae, PLCP overexpression and knockout rice lines were generated. The pathogenicity test revealed the attenuation of Xanthomonas oryzae pv. oryzae race K3a virulence in transgenic lines which is ascribed to high hydrogen peroxide and free salicylic acid accumulation. Next-generation sequencing of RNA from transgenic and wild-type plants identified 1597 combined differentially expressed genes, 1269 of which were exclusively regulated in the transgenic libraries. It was found that PLCP aids rice to circumvent infection through the extensive activation of transduction signal and transcription factors that orchestrate downstream responses, including up-regulation of multiple pathogenesis-related proteins and biosynthesis of secondary metabolites.

Indexed as

Cysteine EndopeptidasesDisease ResistanceGene Expression Regulation, PlantGene Knockout TechniquesGene OntologyGenome, PlantHigh-Throughput Nucleotide SequencingHost Microbial InteractionsHydrogen PeroxideOryzaPlant DiseasesPlants, Genetically ModifiedProtein Interaction MappingReactive Oxygen SpeciesRNA InterferenceRNA-SeqCysteine EndopeptidasesHydrogen PeroxideReactive Oxygen SpeciesSalicylic AcidBacterial blightPapain-like cysteine proteaseRiceRNA sequencingXanthomonas oryzae pv. oryzae

Identifiers

PMID31993730
OpenAlexW3004316972

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.