Evidence map›Paper›PMID 31992747›Full record

ArticleScientific reports2020

Large deletions in immunoglobulin genes are associated with a sustained absence of DNA Polymerase η.

Leticia K Lerner, Thuy V Nguyen, Ligia P Castro, Juliana B Vilar, Veridiana Munford, Morwenna Le Guillou, Mahwish Mian Mohammad, Véronique Vergé, Filippo Rosselli, Carlos F M Menck and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Leticia K LernerCentre National de la Recherche Scientifique UMR8200, Gustave Roussy, 94805, Villejuif, France.ORCID http://orcid.org/0000-0003-3476-5231
Thuy V NguyenCentre National de la Recherche Scientifique UMR8200, Gustave Roussy, 94805, Villejuif, France.
Ligia P CastroDepartment of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.
Juliana B VilarDepartment of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.
Veridiana MunfordDepartment of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-0329-4780
Morwenna Le GuillouCentre National de la Recherche Scientifique UMR8200, Gustave Roussy, 94805, Villejuif, France.ORCID http://orcid.org/0000-0002-3452-2611
Mahwish Mian MohammadCentre National de la Recherche Scientifique UMR8200, Gustave Roussy, 94805, Villejuif, France.
Véronique VergéHaematology Unit, Gustave Roussy, 94805, Villejuif, France.
Filippo RosselliCentre National de la Recherche Scientifique UMR8200, Gustave Roussy, 94805, Villejuif, France.
Carlos F M MenckDepartment of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-1941-0694
Alain SarasinCentre National de la Recherche Scientifique UMR8200, Gustave Roussy, 94805, Villejuif, France.
Said AoufouchiCentre National de la Recherche Scientifique UMR8200, Gustave Roussy, 94805, Villejuif, France. said.aoufouchi@gustaveroussy.fr.ORCID http://orcid.org/0000-0001-6547-2664
Centre National de la Recherche Scientifique · FRUniversidade de São Paulo · BRUniversité Paris-Saclay · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Somatic hypermutation of immunoglobulin genes is a highly mutagenic process that is B cell-specific and occurs during antigen-driven responses leading to antigen specificity and antibody affinity maturation. Mutations at the Ig locus are initiated by Activation-Induced cytidine Deaminase and are equally distributed at G/C and A/T bases. This requires the establishment of error-prone repair pathways involving the activity of several low fidelity DNA polymerases. In the physiological context, the G/C base pair mutations involve multiple error-prone DNA polymerases, while the generation of mutations at A/T base pairs depends exclusively on the activity of DNA polymerase η. Using two large cohorts of individuals with xeroderma pigmentosum variant (XP-V), we report that the pattern of mutations at Ig genes becomes highly enriched with large deletions. This observation is more striking for patients older than 50 years. We propose that the absence of Pol η allows the recruitment of other DNA polymerases that profoundly affect the Ig genomic landscape.

Indexed as

Sequence DeletionAdultAgedAged, 80 and overAllelesAmino Acid SubstitutionBrazilCase-Control StudiesDNA-Directed DNA PolymeraseEnzyme ActivationFranceGene FrequencyGenotypeHumansImmunoglobulinsMiddle AgedDNA-Directed DNA PolymeraseImmunoglobulinsRad30 proteinY-Family DNA Polymerases

Identifiers

PMID31992747
PMCPMC6987143
OpenAlexW3003485854

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.