Evidence map›Paper›PMID 31992590›Full record

ArticleRNA (New York, N.Y.)2020

Dynamic insights on transcription initiation and RNA processing during bacterial adaptation.

Caroline Lacoux, Aymeric Fouquier d'Hérouël, Françoise Wessner-Le Bohec, Nicolas Innocenti, Chantal Bohn, Sean P Kennedy, Tatiana Rochat, Rémy A Bonnin, Pascale Serror, Erik Aurell and 2 more

Open access · bronzeAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in RNA (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Influence ofViruses · 2022
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Caroline LacouxUniversité Paris-Saclay, INRAE, AgroParisTech, MIcalis Institute, 78350, Jouy-en-Josas, France.
Aymeric Fouquier d'HérouëlLuxembourg Center for Systems Biomedicine, University of Luxembourg, 4367, Belvaux, Luxembourg.
Françoise Wessner-Le BohecUniversité Paris-Saclay, INRAE, AgroParisTech, MIcalis Institute, 78350, Jouy-en-Josas, France.
Nicolas InnocentiUniversité Paris-Saclay, INRAE, AgroParisTech, MIcalis Institute, 78350, Jouy-en-Josas, France.
Chantal BohnUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France.
Sean P KennedyDepartment of Computational Biology, USR3756 CNRS, Institut Pasteur, 75 015 Paris, France.
Tatiana RochatVIM, INRA, Université Paris-Saclay, 78350 Jouy-en-Josas, France.
Rémy A BonninUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France.
Pascale SerrorUniversité Paris-Saclay, INRAE, AgroParisTech, MIcalis Institute, 78350, Jouy-en-Josas, France.
Erik AurellDepartment of Computational Biology, Royal Institute of Technology, AlbaNova University Center, SE-10691 Stockholm, Sweden.
Philippe BoulocUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France.
Francis RepoilaUniversité Paris-Saclay, INRAE, AgroParisTech, MIcalis Institute, 78350, Jouy-en-Josas, France.
AgroParisTech · FRCentre National de la Recherche Scientifique · FRAlbaNova · SEUniversité Paris-Saclay · FRUniversity of Luxembourg · LU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcription initiation and RNA processing govern gene expression and enable bacterial adaptation by reshaping the RNA landscape. The aim of this study was to simultaneously observe these two fundamental processes in a transcriptome responding to an environmental signal. A controlled σ

Indexed as

Adaptation, PhysiologicalTranscription Initiation, GeneticEscherichia coliRNARNA, BacterialRNA Processing, Post-TranscriptionalRNA StabilityRNARNA, Bacterialbacterial adaptationRNA degradationRNA processingtagRNA-seqtranscription initiation

Identifiers

PMID31992590
PMCPMC7075262
OpenAlexW3003311203

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.