Evidence map›Paper›PMID 31990923›Full record

ArticlePloS one2020

Impact of genotype, body weight and sex on the prenatal muscle transcriptome of Iberian pigs.

Consolación García-Contreras, Ole Madsen, Martien A M Groenen, Adrián López-García, Marta Vázquez-Gómez, Susana Astiz, Yolanda Núñez, Rita Benítez, Almudena Fernández, Beatriz Isabel and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Consolación García-ContrerasDepartment of Animal Breeding, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.
Ole MadsenAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Martien A M GroenenAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Adrián López-GarcíaDepartment of Animal Breeding, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.ORCID 0000-0002-8649-750X
Marta Vázquez-GómezFaculty of Veterinary Medicine, Complutense University of Madrid (UCM), Madrid, Spain.
Susana AstizDepartment of Animal Reproduction, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.
Yolanda NúñezDepartment of Animal Breeding, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.
Rita BenítezDepartment of Animal Breeding, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.
Almudena FernándezDepartment of Animal Breeding, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.
Beatriz IsabelFaculty of Veterinary Medicine, Complutense University of Madrid (UCM), Madrid, Spain.
Ana Isabel ReyFaculty of Veterinary Medicine, Complutense University of Madrid (UCM), Madrid, Spain.
Antonio González-BulnesDepartment of Animal Reproduction, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.
Cristina ÓviloDepartment of Animal Breeding, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.ORCID 0000-0002-5738-8435
Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria · ESUniversidad Complutense de Madrid · ESWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Growth is dependent on genotype and diet, even at early developmental stages. In this study, we investigated the effects of genotype, sex, and body weight on the fetal muscle transcriptome of purebred Iberian and crossbred Iberian x Large White pigs sharing the same uterine environment. RNA sequencing was performed on 16 purebred and crossbred fetuses with high body weight (340±14g and 415±14g, respectively) and 16 with low body weight (246±14g and 311±14g, respectively), on gestational day 77. Genotype had the greatest effect on gene expression, with 645 genes identified as differentially expressed (DE) between purebred and crossbred animals. Functional analysis showed differential regulation of pathways involved in energy and lipid metabolism, muscle development, and tissue disorders. In purebred animals, fetal body weight was associated with 35 DE genes involved in development, lipid metabolism and adipogenesis. In crossbred animals, fetal body weight was associated with 60 DE genes involved in muscle development, viability, and immunity. Interestingly, the results suggested an interaction genotype*weight for some DE genes. Fetal sex had only a modest effect on gene expression. This study allowed the identification of genes, metabolic pathways, biological functions and regulators related to fetal genotype, weight and sex, in animals sharing the same uterine environment. Our findings contribute to a better understanding of the molecular events that influence prenatal muscle development and highlight the complex interactions affecting transcriptional regulation during development.

Indexed as

AnimalsBody WeightEmbryonic DevelopmentFemaleGene Expression Regulation, DevelopmentalGenotypeLipid MetabolismMuscle, SkeletalPregnancySwineTranscriptome

Identifiers

PMID31990923
PMCPMC6986718
OpenAlexW3004110484

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.