Evidence map›Paper›PMID 31990351›Full record

ArticleIntegrative biology : quantitative biosciences from nano to macro2019

Multiplex gene transfer by genetic transformation between isolated S. pneumoniae cells confined in microfluidic droplets.

Trinh Lam, Mark Maienschein-Cline, David T Eddington, Donald A Morrison

Open access · greenAbstract read
In one paragraph

Article in Integrative biology : quantitative biosciences from nano to macro, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. [Application of Droplet-Based Microfluidics in Microbial Research].Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2023
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Trinh LamDepartment of Bioengineering, University of Illinois at Chicago, Chicago, IL, USA.
Mark Maienschein-ClineResearch Informatics Core, Research Resources Center, University of Illinois at Chicago, Chicago, IL, USA.
David T EddingtonDepartment of Bioengineering, University of Illinois at Chicago, Chicago, IL, USA.
Donald A MorrisonDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA.
University of Illinois Chicago · US

Funding

Strengthening Stakeholder Engagement in Human Research Protections.UL1TR002003 · NCATS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KARNIK, NIRANJAN SUBHASH, MERMELSTEIN, ROBIN J. · 2016 to 2024
$33.7M
Confined Genetic Transformation and Exchange of Antibiotic Resistance Genes in Femtoliter MicrodropletsR21AI133304 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI EDDINGTON, DAVID · 2017 to 2018
$416k
NCATS NIH HHS UL1 TR002003NIAID NIH HHS R21 AI133304
6 · The paper itself

Abstract

Gene exchange via genetic transformation makes major contributions to antibiotic resistance of the human pathogen, Streptococcus pneumoniae (pneumococcus). The transfers begin when a pneumococcal cell, in a transient specialized physiological state called competence, attacks and lyses another cell, takes up fragments of the liberated DNA, and integrates divergent genes into its genome. Recently, it has been demonstrated that the pneumococcal cells can be enclosed in femtoliter-scale droplets for study of the transformation mechanism, offering the ability to characterize individual cell-cell interactions and overcome the limitations of current methods involving bulk mixed cultures. To determine the relevance and reliability of this new method for study of bacterial genetic transformation, we compared recombination events occurring in 44 recombinants recovered after competence-mediated gene exchange between pairs of cells confined in femtoliter-scale droplets vs. those occurring in exchanges in parallel bulk culture mixtures. The pattern of recombination events in both contexts exhibited the hallmarks of the macro-recombination exchanges previously observed within the more complex natural contexts of biofilms and long-term evolution in the human host.

Indexed as

Gene Transfer TechniquesMicrofluidicsStreptococcus pneumoniaeTransformation, BacterialBiofilmsDrug Resistance, BacterialDrug Resistance, MicrobialGenomicsWhole Genome Sequencingdropletshorizontal gene transfermicrofluidicsStreptococcus pneumoniaetransformationwhole genome sequencing

Identifiers

PMID31990351
PMCPMC7011181
OpenAlexW3003769235

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.