Evidence map›Paper›PMID 31989574›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2020

Host Cell Reactivation: Assay for Actively Transcribed DNA (Nucleotide Excision) Repair Using Luciferase Family Expression Vectors.

Jowaher S Alanazi, Jean J Latimer

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jowaher S AlanaziDepartment of Pharmaceutical Sciences, Nova Southeastern University and AutoNation Breast Cancer Institute, Fort Lauderdale, FL, USA.
Jean J LatimerDepartment of Pharmaceutical Sciences, Nova Southeastern University and AutoNation Breast Cancer Institute, Fort Lauderdale, FL, USA. jean.latimer@nova.edu.
AutoNation (United States) · US

Funding

DNA REPAIR AND BREAST CANCERR29CA071894 · NCI · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI LATIMER, JEAN J · 1997 to 2001
$212k
NCI NIH HHS R29 CA071894
6 · The paper itself

Abstract

Host cell reactivation (HCR) is a transfection-based assay in which intact cells repair damage localized to exogenous DNA. This chapter provides instructions for the application of this technique, using as an exemplar UV irradiation as a source of damage to a luciferase reporter plasmid. Through measurement of the activity of a successfully transcribed and translated reporter enzyme, the amount of damaged plasmid that a cell can "reactivate" or repair and express can be quantitated. Different DNA repair pathways can be analyzed by this technique by damaging the reporter plasmid in different ways. Since it involves repair of a transcriptionally active gene, when applied to UV damage the HCR assay measures the capacity of the host cells to perform transcription-coupled repair (TCR), a subset of the overall nucleotide excision repair pathway that specifically targets transcribed gene sequences. This method features two ways to perform the assay using expression vectors with luciferase and beta galactosidase, as well as with firefly luciferase and Renilla luciferase using the same luminometer.

Indexed as

beta-GalactosidaseCell LineDNA RepairGenes, ReporterGenetic TechniquesGenetic VectorsHumansLuciferasesPhosphatidylethanolaminesPlasmidsProteinsTranscription, GeneticTransfectionUltraviolet RaysWorkflow1,2-dielaidoylphosphatidylethanolaminebeta-GalactosidaseLuciferasesPhosphatidylethanolaminesProteins6-4 photoproductsDNA damageFireflyGlobal genomic repair (GGR)Host cell reactivation (HCR)LuciferaseNucleotide excision repair (NER)RenillaThymine dimmersTranscription-coupled repair (TCR)TransfectionUV irradiation

Identifiers

PMID31989574
PMCPMC12188874
OpenAlexW2993232153

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.