Evidence map›Paper›PMID 31989543›Full record

ArticleJournal of microbiology (Seoul, Korea)2020

Analysis of a bac operon-silenced strain suggests pleiotropic effects of bacilysin in Bacillus subtilis.

Ozan Ertekin, Meltem Kutnu, Aslı Aras Taşkin, Mustafa Demir, Ayten Yazgan Karataş, Gülay Özcengiz

Open access · greenAbstract read
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In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Isolation and identification of a novelFrontiers in plant science · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Ozan ErtekinDepartment of Biological Sciences/Molecular Biology and Genetics, Middle East Technical University, Ankara, Turkey.
Meltem KutnuDepartment of Biological Sciences/Molecular Biology and Genetics, Middle East Technical University, Ankara, Turkey.
Aslı Aras TaşkinDepartment of Biological Sciences/Molecular Biology and Genetics, Middle East Technical University, Ankara, Turkey.
Mustafa DemirDepartment of Biological Sciences/Molecular Biology and Genetics, Middle East Technical University, Ankara, Turkey.
Ayten Yazgan KarataşMolecular Biology-Biotechnology and Genetics Research Center (MOBGAM) and Molecular Biology and Genetics Department, Istanbul Technical University, Istanbul, Turkey.
Gülay ÖzcengizDepartment of Biological Sciences/Molecular Biology and Genetics, Middle East Technical University, Ankara, Turkey. ozcengiz@metu.edu.tr.
Middle East Technical University · TRÉcole Polytechnique Fédérale de Lausanne · CHIstanbul Technical University · TRUniversity of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacilysin, as the simplest peptide antibiotic made up of only L-alanine and L-anticapsin, is produced and excreted by Bacillus subtilis under the control of quorum sensing. We analyzed bacilysin-nonproducing strain OGU1 which was obtained by bacA-targeted pMutin T3 insertion into the parental strain genome resulting in a genomic organization (bacA'::lacZ::erm::bacABCDEF) to form an IPTG-inducible bac operon. Although IPTG induction provided 3- to 5-fold increment in the transcription of bac operon genes, no bacilysin activity was detectable in bioassays and inability of the OGU1 to form bacilysin was confirmed by UPLC-mass spectrometry analysis. Phenotypic analyses revealed the deficiencies in OGU1 with respect to colony pigmentation, spore coat proteins, spore resistance and germination, which could be rescued by external addition of bacilysin concentrate into its cultures. 2DE MALDI-TOF/MS and nanoLC-MS/MS were used as complementary approaches to compare cytosolic proteomes of OGU1. 2-DE identified 159 differentially expressed proteins corresponding to 121 distinct ORFs. In nanoLC-MS/MS, 76 proteins were differentially expressed in OGU1. Quantitative transcript analyses of selected genes validated the proteomic findings. Overall, the results pointed to the impact of bacilysin on expression of certain proteins of sporulation and morphogenesis; the members of mother cell compartment-specific σ

Indexed as

Genetic PleiotropyBacillus subtilisBacterial ProteinsDipeptidesGene Expression Regulation, BacterialGenes, BacterialOperonProteomicsQuorum SensingSpores, BacterialbacilysinBacterial ProteinsDipeptidesBacillus subtilisbacilysinbac operonchemical complementationcomparative proteomicspleiotropyRT-qPCRsporulation

Identifiers

PMID31989543
OpenAlexW3003569198

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.