Evidence map›Paper›PMID 31988495›Full record

ArticleCell death and differentiation2020

Deep profiling of apoptotic pathways with mass cytometry identifies a synergistic drug combination for killing myeloma cells.

Charis E Teh, Jia-Nan Gong, David Segal, Tania Tan, Cassandra J Vandenberg, Pasquale L Fedele, Michael S Y Low, George Grigoriadis, Simon J Harrison, Andreas Strasser and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell death and differentiation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  15. Review
  16. Making the most of high-dimensional cytometry data.Immunology and cell biology · 2021
    Review
  17. Article
  18. Article
  19. Targeted Therapies for Multiple Myeloma.Journal of personalized medicine · 2021
    Review
  20. Annual review of cancer biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Charis E TehThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Jia-Nan GongThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
David SegalThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Tania TanThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Cassandra J VandenbergThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Pasquale L FedeleThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Michael S Y LowThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
George GrigoriadisMonash Haematology, Monash Health, Clayton, VIC, Australia.
Simon J HarrisonClinical Haematology, Peter MacCallum Cancer Centre and Royal Melbourne Hospital, Parkville, VIC, Australia.
Andreas StrasserThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Andrew W RobertsThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID http://orcid.org/0000-0002-7341-5720
David C S HuangThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID http://orcid.org/0000-0002-3101-4873
Garry P Nolan *Baxter Laboratory for Stem Cell Biology, Stanford School of Medicine, Stanford, CA, USA. gnolan@stanford.edu.
Daniel H D Gray *The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia. dgray@wehi.edu.au.ORCID http://orcid.org/0000-0002-8457-8242
Melissa E Ko *Baxter Laboratory for Stem Cell Biology, Stanford School of Medicine, Stanford, CA, USA.
The University of Melbourne · AUStanford Medicine · USThe Royal Melbourne Hospital · AUHudson Institute of Medical Research · AUWalter and Eliza Hall Institute of Medical Research · AU

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Systems Biology CoreU19AI100627 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI ULEVITCH, RICHARD J · 2012 to 2021
$49.1M
The Cellular Response to Elafin in PAHP01HL108797 · NHLBI · STANFORD UNIVERSITY · PI RABINOVITCH, MARLENE · 2011 to 2021
$19.7M
Balanced signaling cues to guide cell transitions in the blood lineage continuumR01HL120724 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHAKRABORTY, ARUP K., NOLAN, GARRY P · 2015 to 2019
$3.7M
Stanford Technology Accelerating Medicines Partnership CenterUH2AR067676 · NIAMS · STANFORD UNIVERSITY · PI ROBINSON, WILLIAM H, UTZ, PAUL JOSEPH · 2014 to 2020
$2.6M
(PQD2)New Biomarkers and Pathways to Enhance Cure in Ovarian CancersR01CA184968 · NCI · STANFORD UNIVERSITY · PI FANTL, WENDY JANE, SIKIC, BRANIMIR I · 2014 to 2017
$2.0M
Highly multiplexed ion-beam tissue molecular imaging with sub-micron resolutionR33CA183654 · NCI · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 2014 to 2016
$1.2M
Integrating mass cytometric and transcriptomic profiles of solid tumorsR33CA183692 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WEISS, WILLIAM A · 2014 to 2016
$1.2M
Highly multiplexed ion-beam tissue RNA in situ imaging with sub-micron resolutionR21CA183660 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BOROWSKY, ALEXANDER D, LEVENSON, RICHARD M. · 2014 to 2015
$539k
Identifying Survivors of HSP90 Inhibitor Treatment In Breast Cancer by Mass CytometryF99CA212231 · NCI · STANFORD UNIVERSITY · PI KO, MELISSA ELLEN · 2016 to 2017
$73k
NCI NIH HHS F99 CA212231NCI NIH HHS R01 CA184968NCI NIH HHS R21 CA183660NCI NIH HHS R33 CA183654NCI NIH HHS R33 CA183692NHLBI NIH HHS P01 HL108797NHLBI NIH HHS R01 HL120724NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI100627NIAMS NIH HHS UH2 AR067676
6 · The paper itself

Abstract

Multiple myeloma is an incurable and fatal cancer of immunoglobulin-secreting plasma cells. Most conventional therapies aim to induce apoptosis in myeloma cells but resistance to these drugs often arises and drives relapse. In this study, we sought to identify the best adjunct targets to kill myeloma cells resistant to conventional therapies using deep profiling by mass cytometry (CyTOF). We validated probes to simultaneously detect 26 regulators of cell death, mitosis, cell signaling, and cancer-related pathways at the single-cell level following treatment of myeloma cells with dexamethasone or bortezomib. Time-resolved visualization algorithms and machine learning random forest models (RFMs) delineated putative cell death trajectories and a hierarchy of parameters that specified myeloma cell survival versus apoptosis following treatment. Among these parameters, increased amounts of phosphorylated cAMP response element-binding protein (CREB) and the pro-survival protein, MCL-1, were defining features of cells surviving drug treatment. Importantly, the RFM prediction that the combination of an MCL-1 inhibitor with dexamethasone would elicit potent, synergistic killing of myeloma cells was validated in other cell lines, in vivo preclinical models and primary myeloma samples from patients. Furthermore, CyTOF analysis of patient bone marrow cells clearly identified myeloma cells and their key cell survival features. This study demonstrates the utility of CyTOF profiling at the single-cell level to identify clinically relevant drug combinations and tracking of patient responses for future clinical trials.

Indexed as

ApoptosisSignal TransductionAlgorithmsAntineoplastic Combined Chemotherapy ProtocolsBortezomibCell Line, TumorCell SurvivalDexamethasoneDrug SynergismFlow CytometryHumansMachine LearningMultiple MyelomaMyeloid Cell Leukemia Sequence 1 ProteinProto-Oncogene Proteins c-bcl-2Single-Cell AnalysisBortezomibDexamethasoneMCL1 protein, humanMyeloid Cell Leukemia Sequence 1 ProteinProto-Oncogene Proteins c-bcl-2

Identifiers

PMID31988495
PMCPMC7308383
OpenAlexW3001376583

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.