Evidence map›Paper›PMID 31988380›Full record

ArticleNature microbiology2020

Transcriptional regulation by σ factor phosphorylation in bacteria.

Shankar Chandrashekar Iyer, Delia Casas-Pastor, David Kraus, Petra Mann, Kathrin Schirner, Timo Glatter, Georg Fritz, Simon Ringgaard

Abstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Expanding the genetic toolkit helps dissect a global stress response in the early-branching speciesProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Article
  11. Article
  12. Mechanisms of Action of Non-Canonical ECF Sigma Factors.International journal of molecular sciences · 2022
    Review
  13. Article
  14. Review
  15. Article
  16. Secrete or perish: The role of secretion systems inComputational and structural biotechnology journal · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shankar Chandrashekar IyerDepartment of Ecophysiology, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0001-7716-9419
Delia Casas-PastorLOEWE Center for Synthetic Microbiology (SYNMIKRO), Marburg, Germany.
David KrausLOEWE Center for Synthetic Microbiology (SYNMIKRO), Marburg, Germany.
Petra MannDepartment of Ecophysiology, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Kathrin SchirnerCSL Behring GmbH, Marburg, Germany.
Timo GlatterCore Facility for Mass Spectrometry and Proteomics, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Georg FritzLOEWE Center for Synthetic Microbiology (SYNMIKRO), Marburg, Germany.ORCID http://orcid.org/0000-0002-1503-9165
Simon RinggaardDepartment of Ecophysiology, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany. simon.ringgaard@mpi-marburg.mpg.de.ORCID http://orcid.org/0000-0002-4980-5964

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A major form of transcriptional regulation in bacteria occurs through the exchange of the primary σ factor of RNA polymerase (RNAP) with an alternative extracytoplasmic function (ECF) σ factor

Indexed as

BacteriaDNA, BacterialDNA-Directed RNA PolymerasesGene Expression Regulation, BacterialGenes, BacterialModels, MolecularPhosphorylationProtein Serine-Threonine KinasesProteomicsSigma FactorTranscription, GeneticTranscriptomeVibrio parahaemolyticusDNA, BacterialDNA-Directed RNA PolymerasesProtein Serine-Threonine KinasesSigma Factor

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.