Evidence map›Paper›PMID 31988194›Full record

ArticleGut2020

Therapeutic potential of FLANC, a novel primate-specific long non-coding RNA in colorectal cancer.

Martin Pichler, Cristian Rodriguez-Aguayo, Su Youn Nam, Mihnea Paul Dragomir, Recep Bayraktar, Simone Anfossi, Erik Knutsen, Cristina Ivan, Enrique Fuentes-Mattei, Sang Kil Lee and 29 more

Open access · greenAbstract read
In one paragraph

Article in Gut, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 2 pooled it
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 2 syntheses or guidelines pooled it, 95 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. LncRNAJournal of biomedical research · 2024
    Article
  11. Review
  12. Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Genes & diseases · 2024
    Article
  18. Review
  19. Review
  20. A novel LINC00478 serves as a tumor suppressor in endometrial carcinoma progression.Journal of cancer research and clinical oncology · 2023
    Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 10 institutions in 8 countries.

Martin Pichler *Department of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0002-8701-9462
Cristian Rodriguez-Aguayo *Department of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0002-7880-7723
Su Youn Nam *Department of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0002-5568-7714
Mihnea Paul Dragomir *Department of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0002-5550-3516
Recep BayraktarDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Simone AnfossiDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Erik KnutsenDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Cristina IvanDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0002-4848-0168
Enrique Fuentes-MatteiDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Sang Kil LeeDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Hui LingDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Tina Catela IvkovicDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Guoliang HuangDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Li HuangDepartment of Cancer Biology, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Yoshinaga OkugawaCenter for Gastrointestinal Research and Center for Translational Genomics and Oncology, Baylor Scott and White Health Research Institute and Charles A. Sammons Cancer Center, Baylor University Medical Center, Dallas, Texas, USA.ORCID 0000-0002-0417-5559
Hiroyuki KatayamaDepartment of Clinical Cancer Prevention, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Ayumu TaguchiDepartment of Clinical Cancer Prevention, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Emine BayraktarDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Rajat BhattacharyaDepartment of Surgical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Paola AmeroDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
William Ruixian HeDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Anh M TranDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Petra Vychytilova-FaltejskovaCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.
Christiane KlecDivision of Oncology, Medical University of Graz, Graz, Styria, Austria.
Diana L BonillaDepartment of Stem Cell Transplantation, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Xinna ZhangCenter for RNA interference and Non-coding RNA, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Sanja KapitanovicDivision of Molecular Medicine, Ruder Boskovic Institute, Zagreb, Croatia.
Bozo LoncarDepartment of Surgery, Dubrava Clinical Hospital, Zagreb, Croatia.
Roberta GafàDepartment of Morphology, Surgery and Experimental Medicine, University of Ferrara, Ferrara, Emilia-Romagna, Italy.
Zhihui WangMathematics in Medicine Program, The Houston Methodist Research Institute, Houston, Texas, USA.
Vittorio CristiniMathematics in Medicine Program, The Houston Methodist Research Institute, Houston, Texas, USA.
Samir M HanashDepartment of Clinical Cancer Prevention, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Menashe Bar-EliDepartment of Cancer Biology, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Giovanni LanzaDepartment of Medical Sciences, University of Ferrara, Ferrara, Emilia-Romagna, Italy.
Ondrej SlabyCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.
Ajay GoelCenter for Gastrointestinal Research and Center for Translational Genomics and Oncology, Baylor Scott and White Health Research Institute and Charles A. Sammons Cancer Center, Baylor University Medical Center, Dallas, Texas, USA.
Isidore RigoutsosComputational Medicine Center and Department of Pathology, Anatomy and Cell Biology, Thomas Jefferson University, Philadelphia, Pennsylvania, USA.ORCID 0000-0003-1529-8631
Gabriel Lopez-BeresteinDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA gcalin@mdanderson.org glopez@mdanderson.org.
George Adrian CalinDepartment of Experimental Therapeutics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA gcalin@mdanderson.org glopez@mdanderson.org.ORCID 0000-0002-7427-0578
The University of Texas MD Anderson Cancer Center · USCentral European Institute of Technology · CZHouston Methodist · USUniversity of Ferrara · ITBaylor University Medical Center · USCity Of Hope National Medical Center · USMedical University of Graz · ATRuđer Bošković Institute · HRThomas Jefferson University · USUniversity Hospital Dubrava · HR

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
UPR/MDACC Partnership for Excellence in Cancer Research(Parent Grant U54 CA096297)U54CA096297 · NCI · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI SHARON Hermes GIORDANO, REYNOLD Eugenio LOPEZ-ENRIQUEZ · 2002 to 2026
$36.9M
UPR/MDACC Partnership for Excellence in Cancer Research (Luis Segarra supplement)U54CA096300 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SHARON Hermes GIORDANO · 2002 to 2026
$23.8M
Project 3: Inhibiting Oxidative Phosphorylation in Pancreatic CancerP50CA221707 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KOPETZ, SCOTT, MAITRA, ANIRBAN · 2019 to 2023
$11.0M
Transport Oncophysics CoreU54CA210181 · NCI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI CHANG, JENNY C-N, SHEN, HAIFA · 2016 to 2020
$9.3M
The Biology and Diagnosis of HNPCCR01CA072851 · NCI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI GOEL, AJAY · 1996 to 2019
$6.6M
Imaging and Molecular Correlates of Progression in Cystic Neoplasms of the PancreasU01CA196403 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MAITRA, ANIRBAN · 2015 to 2020
$5.8M
A Targeted Nanomedicine Prototype Against Enzalutamide-resistant Prostate CancerR01CA226537 · NCI · RBHS -CANCER INSTITUTE OF NEW JERSEY · PI ARAP, WADIH, BRINKER, C JEFFREY · 2018 to 2022
$3.2M
Novel extra cellular RNA-based combinatorial RNA inhibition therapyUH3TR000943 · NCATS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI CALIN, GEORGE A., LOPEZ-BERESTEIN, GABRIEL · 2015 to 2017
$3.2M
Protein-coding and non-coding RNA biomarkers for early detection of CLLR01CA182905 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI ABRUZZO, LYNNE V., CALIN, GEORGE A. · 2014 to 2018
$2.9M
Aspirin and Cancer Prevention in Lynch Syndrome: From Cell to Population DataU01CA187956 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI GOEL, AJAY, WODARZ, DOMINIK F · 2014 to 2018
$2.7M
miR-155 targeted therapeutics for precision medicine in lung cancerR01CA222007 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI CALIN, GEORGE A., CRISTINI, VITTORIO · 2018 to 2022
$2.6M
NCATS NIH HHS UH3 TR000943NCI NIH HHS P30 CA016672NCI NIH HHS P50 CA221707NCI NIH HHS R01 CA072851NCI NIH HHS R01 CA181572NCI NIH HHS R01 CA182905NCI NIH HHS R01 CA184792NCI NIH HHS R01 CA222007NCI NIH HHS R01 CA226537NCI NIH HHS U01 CA187956NCI NIH HHS U01 CA196403NCI NIH HHS U01 CA213759NCI NIH HHS U54 CA096297NCI NIH HHS U54 CA096300NCI NIH HHS U54 CA210181NIGMS NIH HHS R01 GM122775
6 · The paper itself

Abstract

objectiveTo investigate the function of a novel primate-specific long non-coding RNA (lncRNA), named FLANC, based on its genomic location (co-localised with a pyknon motif), and to characterise its potential as a biomarker and therapeutic target.

designFLANC expression was analysed in 349 tumours from four cohorts and correlated to clinical data. In a series of multiple in vitro and in vivo models and molecular analyses, we characterised the fundamental biological roles of this lncRNA. We further explored the therapeutic potential of targeting FLANC in a mouse model of colorectal cancer (CRC) metastases.

resultsFLANC, a primate-specific lncRNA feebly expressed in normal colon cells, was significantly upregulated in cancer cells compared with normal colon samples in two independent cohorts. High levels of FLANC were associated with poor survival in two additional independent CRC patient cohorts. Both in vitro and in vivo experiments demonstrated that the modulation of FLANC expression influenced cellular growth, apoptosis, migration, angiogenesis and metastases formation ability of CRC cells. In vivo pharmacological targeting of FLANC by administration of 1,2-dioleoyl-sn-glycero-3-phosphatidylcholine nanoparticles loaded with a specific small interfering RNA, induced significant decrease in metastases, without evident tissue toxicity or pro-inflammatory effects. Mechanistically, FLANC upregulated and prolonged the half-life of phosphorylated STAT3, inducing the overexpression of VEGFA, a key regulator of angiogenesis.

conclusionsBased on our findings, we discovered, FLANC as a novel primate-specific lncRNA that is highly upregulated in CRC cells and regulates metastases formation. Targeting primate-specific transcripts such as FLANC may represent a novel and low toxic therapeutic strategy for the treatment of patients.

Indexed as

CarcinogenesisCell ProliferationColorectal NeoplasmsNeovascularization, PathologicRNA, Long NoncodingAnimalsBiomarkers, TumorDrug DiscoveryGene Expression Regulation, NeoplasticGenetic MarkersGenetic TherapyHumansMicePharmacogenomic TestingSTAT3 Transcription FactorVascular Endothelial Growth Factor ABiomarkers, TumorGenetic MarkersRNA, Long NoncodingSTAT3 Transcription FactorVascular Endothelial Growth Factor Aangiogenesiscolorectal cancergene therapymolecular geneticsoncogenes

Identifiers

PMID31988194
PMCPMC7382985
OpenAlexW3002374105

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.