Evidence map›Paper›PMID 31988003›Full record

ArticleMethods (San Diego, Calif.)2020

Comprehensive analysis of histone-binding proteins with multi-angle light scattering.

Prithwijit Sarkar, Noushin Akhavantabib, Sheena D'Arcy

Open access · greenAbstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Antibody Reveals Conformational Latch Controlling Herpesvirus Proteases.bioRxiv : the preprint server for biology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Prithwijit SarkarDepartment of Biological Sciences, The University of Texas at Dallas, TX 75080, United States.
Noushin AkhavantabibDepartment of Chemistry and Biochemistry, The University of Texas at Dallas, TX 75080, United States.
Sheena D'ArcyDepartment of Chemistry and Biochemistry, The University of Texas at Dallas, TX 75080, United States. Electronic address: Sheena.Darcy@utdallas.edu.
The University of Texas at Dallas · US

Funding

The Role of Dynamics in Regulating Multi-Activity Protein Complexes and ChromatinR35GM133751 · NIGMS · UNIVERSITY OF TEXAS DALLAS · PI Sheena D'Arcy · 2019 to 2026
$2.9M
NIGMS NIH HHS R35 GM133751
6 · The paper itself

Abstract

Interactions between histones and their binding partners are an important aspect of chromatin biology. Determining the stoichiometry of histone-containing complexes is an important pre-requisite for performing in vitro biochemical, biophysical and structural analyses. In this article, we detail how Size Exclusion Chromatography (SEC) coupled to Multi-Angle Light Scattering (MALS) can be used to study histone chaperones and their complexes. Our protocol details system setup, sample preparation, data collection, and data interpretation. We provide tips on designing an informative SEC-MALS experiment, using histone chaperones Nap1 and Vps75 as demonstrative examples. We outline recommendations to overcome specific challenges such as protein oligomerization, heterogeneity, and non-specific binding. We find SEC-MALS to be a robust and user-friendly approach for characterizing histone-binding proteins and their complexes.

Indexed as

LightScattering, RadiationChromatography, GelHistonesMolecular ChaperonesProtein AggregatesRecombinant ProteinsSaccharomyces cerevisiae ProteinstRNA MethyltransferasesHistonesMolecular ChaperonesProtein AggregatesRecombinant ProteinsSaccharomyces cerevisiae ProteinsTRMO protein, humantRNA MethyltransferasesVps75 protein, S cerevisiaeHistone chaperoneHistonesMulti-angle light scatteringStoichiometry

Identifiers

PMID31988003
PMCPMC7381358
OpenAlexW3001324627

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.