Evidence map›Paper›PMID 31987216›Full record

ArticleTalanta2020

A surface-enhanced Raman spectroscopy database of 63 metabolites.

Lindy M Sherman, Alexander P Petrov, Leonhard F P Karger, Maxwell G Tetrick, Norman J Dovichi, Jon P Camden

Abstract read
In one paragraph

Article in Talanta, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Decoding the metabolic response ofProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lindy M ShermanDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556-5670, United States. Electronic address: ndovichi@nd.edu.
Alexander P PetrovDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556-5670, United States.
Leonhard F P KargerDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556-5670, United States.
Maxwell G TetrickDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556-5670, United States.
Norman J DovichiDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556-5670, United States.
Jon P CamdenDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556-5670, United States.

Funding

Technology for single cell proteomics and its application to the analysis of single Xenopus blastomeresR01GM096767 · NIGMS · UNIVERSITY OF NOTRE DAME · PI DOVICHI, NORMAN J · 2011 to 2019
$2.5M
NIGMS NIH HHS R01 GM096767
6 · The paper itself

Abstract

Metabolomics, the study of metabolic profiles in a biological sample, has seen rapid growth due to advances in measurement technologies such as mass spectrometry (MS). While MS metabolite reference libraries have been generated for metabolomics applications, mass spectra alone are unable to unambiguously identify many metabolites in a sample; these unidentified compounds are typically annotated as "features". Surface-enhanced Raman spectroscopy (SERS) is an interesting technology for metabolite identification based on vibrational spectra. However, no reports have been published that present SERS metabolite spectra from chemical libraries. In this paper, we demonstrate that an untargeted approach utilizing citrate-capped silver nanoparticles yields SERS spectra for 20% of 80 compounds chosen randomly from a commercial metabolite library. Furthermore, prescreening of the metabolites according to chemical functionality allowed for the efficient identification of samples within the library that yield distinctive SERS spectra under our experimental conditions. Last, we present a reference database of 63 metabolite SERS spectra for use as an identification tool in metabolomics studies; this set includes 30 metabolites that have not had previously published SERS spectra.

Indexed as

Databases, ChemicalMetabolomicsSpectrum Analysis, RamanSurface PropertiesMetaboliteReference librarySERSSurface-enhanced Raman spectroscopy

Identifiers

PMID31987216
PMCPMC6989628

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.