Evidence map›Paper›PMID 31982944›Full record

ArticleArchives of virology2020

A recombinant infectious bronchitis virus from a chicken with a spike gene closely related to that of a turkey coronavirus.

Yan Wang, Xuejiao Cui, Xu Chen, Shixing Yang, Yu Ling, Qianben Song, Su Zhu, Luying Sun, Chuang Li, Yu Li and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Archives of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Phytochemical profiling,Frontiers in chemistry · 2022
    Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Yan WangCollege of Animal Sciences and Technologies, Anhui Agricultural University, Hefei, 230036, China.
Xuejiao CuiCollege of Animal Sciences and Technologies, Anhui Agricultural University, Hefei, 230036, China.
Xu ChenSchool of Medicine, Jiangsu University, 310 Xuefu Road, Zhenjiang, 202103, Jiangsu, China.
Shixing YangSchool of Medicine, Jiangsu University, 310 Xuefu Road, Zhenjiang, 202103, Jiangsu, China.
Yu LingSchool of Medicine, Jiangsu University, 310 Xuefu Road, Zhenjiang, 202103, Jiangsu, China.
Qianben SongSchool of Medicine, Jiangsu University, 310 Xuefu Road, Zhenjiang, 202103, Jiangsu, China.
Su ZhuSchool of Medicine, Jiangsu University, 310 Xuefu Road, Zhenjiang, 202103, Jiangsu, China.
Luying SunSchool of Medicine, Jiangsu University, 310 Xuefu Road, Zhenjiang, 202103, Jiangsu, China.
Chuang LiSchool of Medicine, Jiangsu University, 310 Xuefu Road, Zhenjiang, 202103, Jiangsu, China.
Yu LiCollege of Animal Sciences and Technologies, Anhui Agricultural University, Hefei, 230036, China. liyu@ahau.edu.cn.
Xutao DengVitalant Research Institute, 270 Masonic Avenue, San Francisco, CA, 941187, USA.
Eric DelwartVitalant Research Institute, 270 Masonic Avenue, San Francisco, CA, 941187, USA.
Wen ZhangSchool of Medicine, Jiangsu University, 310 Xuefu Road, Zhenjiang, 202103, Jiangsu, China. z0216wen@yahoo.com.
Jiangsu University · CNAnhui Agricultural University · CNUniversity of California, San Francisco · USVitalant · US

Funding

Blood Systems Research Institute NoJiangsu Provincial Key Research and Development Projects BE2017693Jiangsu social development project BE2016663National Key Research and Development Programs of China 2017YFC1200201National Natural Science Foundation of China 81741062Student's Platform for Innovation and Entrepreneurship Training Program 201810299587W
6 · The paper itself

Abstract

Using viral metagenomics, the complete genome sequence of an infectious bronchitis virus (IBV) strain (named ahysx-1) from a fecal sample from a healthy chicken in Anhui province, China, was determined. The genome sequence of ahysx-1 was found to be very similar to that of IBV strain ck/CH/LLN/131040 (KX252787), except for the spike gene region, which is similar to that of a turkey coronavirus strain (EU022526), suggesting that ahysx-1 is a recombinant. Recombination analysis and phylogenetic analysis based on the genomic sequences of ahysx-1 and other related strains confirmed that ahysx-1 appears to be a recombinant resulting from a recombination event that occurred between a chicken coronavirus and a turkey coronavirus. Further studies need to be performed to determine whether this recombinant IBV strain is pathogenic and whether it is transmitted between chickens and turkeys.

Indexed as

Recombination, GeneticAnimalsChickensCoronavirusGenome, ViralInfectious bronchitis virusMetagenomicsPhylogenySpike Glycoprotein, CoronavirusTurkeysSpike Glycoprotein, CoronavirusCoronavirusGenome recombinationInfectious bronchitis virusViral metagenomics

Identifiers

PMID31982944
PMCPMC7087231
OpenAlexW3003094051

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.