Evidence map›Paper›PMID 31981779›Full record

ArticleNeuroImage2020

Fidelity imposed network edit (FINE) for solving ill-posed image reconstruction.

Jinwei Zhang, Zhe Liu, Shun Zhang, Hang Zhang, Pascal Spincemaille, Thanh D Nguyen, Mert R Sabuncu, Yi Wang

Abstract read
In one paragraph

Article in NeuroImage, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
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  8. [A multi-channel input convolutional neural network for artifact reduction in quantitative susceptibility mapping].Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. A review and experimental evaluation of deep learning methods for MRI reconstruction.The journal of machine learning for biomedical imaging · 2022
    Article
  13. Article
  14. Article
  15. Deep-learning-based Optimization of the Under-sampling Pattern in MRI.IEEE transactions on computational imaging · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jinwei ZhangDepartment of Biomedical Engineering, Cornell University, Ithaca, NY, USA; Department of Radiology, Weill Medical College of Cornell University, New York, NY, USA.
Zhe LiuDepartment of Biomedical Engineering, Cornell University, Ithaca, NY, USA; Department of Radiology, Weill Medical College of Cornell University, New York, NY, USA.
Shun ZhangDepartment of Radiology, Weill Medical College of Cornell University, New York, NY, USA.
Hang ZhangDepartment of Radiology, Weill Medical College of Cornell University, New York, NY, USA; Department of Electrical and Computer Engineering, Cornell University, Ithaca, NY, USA.
Pascal SpincemailleDepartment of Radiology, Weill Medical College of Cornell University, New York, NY, USA.
Thanh D NguyenDepartment of Radiology, Weill Medical College of Cornell University, New York, NY, USA.
Mert R SabuncuDepartment of Biomedical Engineering, Cornell University, Ithaca, NY, USA; Department of Radiology, Weill Medical College of Cornell University, New York, NY, USA; Department of Electrical and Computer Engineering, Cornell University, Ithaca, NY, USA.
Yi WangDepartment of Biomedical Engineering, Cornell University, Ithaca, NY, USA; Department of Radiology, Weill Medical College of Cornell University, New York, NY, USA. Electronic address: yiwang@med.cornell.edu.

Funding

Quantitative Mapping of Substantia Nigra Iron in Parkinson's DiseaseR01NS095562 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI SHTILBANS, ALEXANDER, WANG, YI · 2016 to 2022
$3.1M
No-Gd MRI for Monitoring Disease Status in Multiple SclerosisR01NS105144 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI GAUTHIER, SUSAN A, GUPTA, AJAY · 2018 to 2022
$2.8M
Advanced machine learning algorithms that integrate genomewide, longitudinal MRI and demographic data to predict future cognitive decline toward dementiaR01AG053949 · NIA · WEILL MEDICAL COLL OF CORNELL UNIV · PI SABUNCU, MERT RORY · 2017 to 2021
$2.4M
Multiple Sclerosis Lesion Magnetic Susceptibility ActivityR01NS090464 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI WANG, YI · 2015 to 2020
$2.3M
3.0T Magnetic Resonance Imaging System for Preclinical, Translational and Clinical ResearchS10OD021782 · OD · WEILL MEDICAL COLL OF CORNELL UNIV · PI WANG, YI · 2016 to 2016
$2.0M
Compact Representations of Dynamic Liver MRIR01CA181566 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI SPINCEMAILLE, PASCAL · 2015 to 2019
$1.9M
Novel Bioinformatics Strategies to Study Associations Between Genetic Variants and Neuroanatomical ShapeR01LM012719 · NLM · CORNELL UNIVERSITY · PI SABUNCU, MERT RORY · 2017 to 2020
$1.4M
Multi-modal Prediction of Future Clinical DementiaR21AG050122 · NIA · MASSACHUSETTS GENERAL HOSPITAL · PI VAN LEEMPUT, KOEN · 2016 to 2017
$470k
NCI NIH HHS R01 CA181566NIA NIH HHS R01 AG053949NIA NIH HHS R21 AG050122NIH HHS S10 OD021782NINDS NIH HHS R01 NS090464NINDS NIH HHS R01 NS095562NINDS NIH HHS R01 NS105144NLM NIH HHS R01 LM012719
6 · The paper itself

Abstract

Deep learning (DL) is increasingly used to solve ill-posed inverse problems in medical imaging, such as reconstruction from noisy and/or incomplete data, as DL offers advantages over conventional methods that rely on explicit image features and hand engineered priors. However, supervised DL-based methods may achieve poor performance when the test data deviates from the training data, for example, when it has pathologies not encountered in the training data. Furthermore, DL-based image reconstructions do not always incorporate the underlying forward physical model, which may improve performance. Therefore, in this work we introduce a novel approach, called fidelity imposed network edit (FINE), which modifies the weights of a pre-trained reconstruction network for each case in the testing dataset. This is achieved by minimizing an unsupervised fidelity loss function that is based on the forward physical model. FINE is applied to two important inverse problems in neuroimaging: quantitative susceptibility mapping (QSM) and under-sampled image reconstruction in MRI. Our experiments demonstrate that FINE can improve reconstruction accuracy.

Indexed as

Deep LearningAdultBrainCerebral HemorrhageComputer SimulationHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingMultiple SclerosisNeuroimagingData fidelityDeep learningInverse problemQuantitative susceptibility mappingUnder-sampled image reconstruction

Identifiers

PMID31981779
PMCPMC7093048

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.