Evidence map›Paper›PMID 31981054›Full record

ArticleTropical animal health and production2020

Single nucleotide polymorphisms at heat shock protein 90 gene and their association with thermo-tolerance potential in selected indigenous Nigerian cattle.

Gbolabo O Onasanya, George M Msalya, Aranganoor K Thiruvenkadan, Chirukandoth Sreekumar, Gopalan K Tirumurugaan, Timothy M Sanni, John S Decampos, Samuel A Amusan, Olajide Olowofeso, Adeboye O Fafiolu and 3 more

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In one paragraph

Article in Tropical animal health and production, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
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  3. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Gbolabo O OnasanyaDepartment of Animal Science, Federal University Dutse, Dutse, Nigeria.
George M MsalyaMecheri Sheep Research Station, Pottaneri, Tamil Nadu Veterinary and Animal Sciences University, Chennai, India. msalya@sua.ac.tz.ORCID https://orcid.org/0000-0001-7005-247X
Aranganoor K ThiruvenkadanMecheri Sheep Research Station, Pottaneri, Tamil Nadu Veterinary and Animal Sciences University, Chennai, India.
Chirukandoth SreekumarBiotechnology Center, Postgraduate Research Institute in Animal Sciences, Kattupakkum, Tamil Nadu Veterinary and Animal Sciences University, Chennai, India.
Gopalan K TirumurugaanDepartment of Animal Biotechnology, Madras Veterinary College, Tamil Nadu Veterinary and Animal Sciences University, Chennai, India.
Timothy M SanniDeparment of Animal Breeding and Genetics, Federal University of Agriculture, Abeokuta, Ogun State, Nigeria.
John S DecamposDepartment of Animal Production, University of Ilorin, Ilorin, Kwara State, Nigeria.
Samuel A AmusanDepartment of Animal production, Federal College of Animal Health and Production Technology, Moor Plantation, Ibadan, Nigeria.
Olajide OlowofesoDeparment of Animal Breeding and Genetics, Federal University of Agriculture, Abeokuta, Ogun State, Nigeria.
Adeboye O FafioluDepartment of Animal Nutrition, Federal University of Agriculture, Abeokuta, Ogun State, Nigeria.
Moses OkpekuDepartment of Genetics, School of Life Sciences, University of KwaZulu-Natal, Westvile Campus, Durban, South Africa.
Abdulmojeed YakubuDepartment of Animal Science, Faculty of Agriculture, Nasarawa State University, Keffi, Shabu-Lafia Campus, Lafia, Nigeria.
Christian O IkeobiDeparment of Animal Breeding and Genetics, Federal University of Agriculture, Abeokuta, Ogun State, Nigeria.
Federal University of Agriculture · NGTamil Nadu Veterinary and Animal Sciences University · INNasarawa State University · NGUniversity of Ilorin · NGUniversity of KwaZulu-Natal · ZA

Funding

Department of Science and Technology, India NA
6 · The paper itself

Abstract

Heat shock protein (HSP) 90 gene provides protection and adaptation to thermal assault and certain polymorphisms have been associated to heat tolerance in humans and animals. Single nucleotide polymorphisms (SNPs) of HSP 90 gene were used to evaluate the scientific basis of heat tolerance in four zebu breeds of Nigeria. The DNA was extracted from skin tissue of 90 adult bulls representing White Fulani (WF), Sokoto Gudali (SG), Red Bororo (RB), and Ambala (AM). The SNPs were determined in DNAs using PCR, sequencing, and visualization and bio-editing by chromatogram in SeqMan Ngen tool. Subsequently, respective genotypes were constructed and genotypic and allelic frequencies were computed. Also, body parameters related to heat stress (HS) including body temperature (BT), rectal temperature (RT), and respiratory rates (RR) were taken for each animal before biological sampling and heat tolerance coefficient (HTC) was calculated. We detected four SNPs distinct/specific for each breed as follows: change from thymine (T) to guanine (G) at position 116 (T116G) in RB, G to cytosine (C) at 220 (G220C) in SG, G to adenine (A) at two positions, 346 (G346A) and 390 (G390A) in AM and WF, respectively. Heterozygous SNPs showed significantly lower values (P < 0.0001) for BT, RT, RR, and HTC than homozygous genotypes at all positions. We hypothesize that animals with heterozygous SNPs in exon 3 of HSP 90 may be tolerant to HS. These SNPs can be used as bio-markers for screening large populations of cattle for tolerance to hot tropical conditions in Nigeria and other sub-humid places.

Indexed as

Polymorphism, Single NucleotideAnimalsCattleHSP90 Heat-Shock ProteinsNigeriaThermotoleranceHSP90 Heat-Shock ProteinsHeat stressInsertion-deletionSNP variantsTransversionZebu

Identifiers

PMID31981054
OpenAlexW3001705600

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.