Evidence map›Paper›PMID 31981004›Full record

ArticleMarine biotechnology (New York, N.Y.)2020

Tentacle Transcriptomes of the Speckled Anemone (Actiniaria: Actiniidae: Oulactis sp.): Venom-Related Components and Their Domain Structure.

Michela L Mitchell, Gerry Q Tonkin-Hill, Rodrigo A V Morales, Anthony W Purcell, Anthony T Papenfuss, Raymond S Norton

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Marine biotechnology (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 3 countries.

Michela L MitchellMedicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, Victoria, 3052, Australia. michela.mitchell@qm.qld.gov.au.ORCID https://orcid.org/0000-0001-6331-534X
Gerry Q Tonkin-HillBioinformatics Division, Walter & Eliza Hall Institute of Research, 1G Royal Parade, Parkville, Victoria, 3052, Australia.ORCID https://orcid.org/0000-0003-4397-2224
Rodrigo A V MoralesMedicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, Victoria, 3052, Australia.ORCID https://orcid.org/0000-0002-7973-356X
Anthony W PurcellDepartment of Biochemistry and Molecular Biology and Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, Victoria, 3800, Australia.ORCID https://orcid.org/0000-0003-0532-8331
Anthony T PapenfussBioinformatics Division, Walter & Eliza Hall Institute of Research, 1G Royal Parade, Parkville, Victoria, 3052, Australia.ORCID https://orcid.org/0000-0002-1102-8506
Raymond S NortonMedicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, Victoria, 3052, Australia.ORCID https://orcid.org/0000-0001-8893-0584
Walter and Eliza Hall Institute of Medical Research · AUAustralian Regenerative Medicine Institute · AUCSL (United Kingdom) · GBMonash University · AUThe University of Melbourne · AU

Funding

ARC Linkage Grant LP150100621Australian Government Research Training Program Scholarship n/aAustralian National Health and Medical Research Council n/aMonash Medicinal Chemistry Faculty Scholarship n/aMonash University-Museum Victoria Scholarship top-up n/a
6 · The paper itself

Abstract

Cnidarians are one of the oldest known animal lineages (ca. 700 million years), with a unique envenomation apparatus to deliver a potent mixture of peptides and proteins. Some peptide toxins from cnidarian venom have proven therapeutic potential. Here, we use a transcriptomic/proteomic strategy to identify sequences with similarity to known venom protein families in the tentacles of the endemic Australian 'speckled anemone' (Oulactis sp.). Illumina RNASeq data were assembled de novo. Annotated sequences in the library were verified by cross-referencing individuals' transcriptomes or protein expression evidence from LC-MS/MS data. Sequences include pore-forming toxins, phospholipases, peptidases, neurotoxins (sodium and potassium channel modulators), cysteine-rich secretory proteins and defensins (antimicrobial peptides). Fewer than 4% of the sequences in the library occurred across the three individuals examined, demonstrating high sequence variability of an individual's arsenal. We searched for actinoporins in Oulactis sp. to assess sequence similarity to the only described toxins (OR-A and -G) for this genus and examined the domain architecture of venom-related peptides and proteins. The novel putative actinoporin of Oulactis sp. has a greater similarity to other species in the Actiniidae family than to O. orientalis. Venom-related sequences have an architecture that occurs in single, repeat or multi-domain combinations of venom-related (e.g. ShK-like) and non-venom (e.g. whey acid protein) domains. This study has produced the first transcriptomes for an endemic Australian sea anemone species and the genus Oulactis, while identifying nearly 400 novel venom-related peptides and proteins for future structural and functional analyses and venom evolution studies.

Indexed as

TranscriptomeAnimalsChromatography, LiquidCnidarian VenomsProteomeSea AnemonesTandem Mass SpectrometryCnidarian VenomsProteomeActinoporinCnidariaPeptideProteinSea anemoneVenom

Identifiers

PMID31981004
OpenAlexW3002400534

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.