Evidence map›Paper›PMID 31980681›Full record

ArticleScientific reports2020

CREBBP and WDR 24 Identified as Candidate Genes for Quantitative Variation in Red-Brown Plumage Colouration in the Chicken.

J Fogelholm, R Henriksen, A Höglund, N Huq, M Johnsson, R Lenz, P Jensen, D Wright

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

J FogelholmAVIAN Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, 58183, Sweden.
R HenriksenAVIAN Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, 58183, Sweden.
A HöglundAVIAN Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, 58183, Sweden.
N HuqAVIAN Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, 58183, Sweden.
M JohnssonThe Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Midlothian, EH25 9RG, Scotland, United Kingdom.
R LenzITN Dept of Science and Technology, Linköping University, Linköping, 58183, Sweden.
P JensenAVIAN Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, 58183, Sweden.
D WrightAVIAN Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, 58183, Sweden. dominic.wright@liu.se.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plumage colouration in birds is important for a plethora of reasons, ranging from camouflage, sexual signalling, and species recognition. The genes underlying colour variation have been vital in understanding how genes can affect a phenotype. Multiple genes have been identified that affect plumage variation, but research has principally focused on major-effect genes (such as those causing albinism, barring, and the like), rather than the smaller effect modifier loci that more subtly influence colour. By utilising a domestic × wild advanced intercross with a combination of classical QTL mapping of red colouration as a quantitative trait and a targeted genetical genomics approach, we have identified five separate candidate genes (CREBBP, WDR24, ARL8A, PHLDA3, LAD1) that putatively influence quantitative variation in red-brown colouration in chickens. By treating colour as a quantitative rather than qualitative trait, we have identified both QTL and genes of small effect. Such small effect loci are potentially far more prevalent in wild populations, and can therefore potentially be highly relevant to colour evolution.

Indexed as

Quantitative Trait LociAnimalsChickensChromosome MappingCREB-Binding ProteinCrosses, GeneticFeathersFemaleGenetic Association StudiesLod ScoreMalePigmentationWD40 RepeatsWings, AnimalCREB-Binding Protein

Identifiers

PMID31980681
PMCPMC6981141

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.