Evidence map›Paper›PMID 31980615›Full record

ArticleNature communications2020

High-quality genome sequence of white lupin provides insight into soil exploration and seed quality.

Bárbara Hufnagel, André Marques, Alexandre Soriano, Laurence Marquès, Fanchon Divol, Patrick Doumas, Erika Sallet, Davide Mancinotti, Sébastien Carrere, William Marande and 18 more

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed.

  1. Article
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  4. Science advances · 2026
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  10. Review
  11. Gibberellin biosynthesis inFrontiers in plant science · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Leveraging Transcriptome Insights andPlants (Basel, Switzerland) · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Bárbara HufnagelBPMP, Univ Montpellier, CNRS, INRAE, SupAgro, Montpellier, France.ORCID http://orcid.org/0000-0002-3515-2122
André MarquesBPMP, Univ Montpellier, CNRS, INRAE, SupAgro, Montpellier, France.ORCID http://orcid.org/0000-0002-9567-2576
Alexandre SorianoBPMP, Univ Montpellier, CNRS, INRAE, SupAgro, Montpellier, France.
Laurence MarquèsBPMP, Univ Montpellier, CNRS, INRAE, SupAgro, Montpellier, France.
Fanchon DivolBPMP, Univ Montpellier, CNRS, INRAE, SupAgro, Montpellier, France.
Patrick DoumasBPMP, Univ Montpellier, CNRS, INRAE, SupAgro, Montpellier, France.
Erika SalletLIPM, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0003-4637-473X
Davide MancinottiUniversity of Copenhagen, Frederiksberg C, Denmark.
Sébastien CarrereLIPM, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0002-2348-0778
William MarandeCNRGV, INRAE, Toulouse, France.
Sandrine ArribatCNRGV, INRAE, Toulouse, France.
Jean KellerLaboratoire de Recherche en Sciences Végétales (LRSV), Université de Toulouse, CNRS, Castanet Tolosan, France.ORCID http://orcid.org/0000-0002-5198-0331
Cécile HuneauINRAE GDEC, Clermont-Ferrand, France.
Thomas BleinInstitute of Plant Sciences Paris-Saclay, Gif-sur-Yvette, France.
Delphine AiméINRAE Agroécologie, Dijon, France.
Malika LaguerreBPMP, Univ Montpellier, CNRS, INRAE, SupAgro, Montpellier, France.
Jemma TaylorRoyal Botanic Gardens, Kew, UK.
Veit SchubertIPK, Gatersleben, Germany.
Matthew NelsonRoyal Botanic Gardens, Kew, UK.
Fernando Geu-FloresUniversity of Copenhagen, Frederiksberg C, Denmark.
Martin CrespiInstitute of Plant Sciences Paris-Saclay, Gif-sur-Yvette, France.
Karine GallardoINRAE Agroécologie, Dijon, France.ORCID http://orcid.org/0000-0002-6785-1534
Pierre-Marc DelauxLaboratoire de Recherche en Sciences Végétales (LRSV), Université de Toulouse, CNRS, Castanet Tolosan, France.ORCID http://orcid.org/0000-0002-6211-157X
Jérôme SalseINRAE GDEC, Clermont-Ferrand, France.ORCID http://orcid.org/0000-0003-2942-1098
Hélène BergèsCNRGV, INRAE, Toulouse, France.
Romain GuyotIRD, Montpellier, France INRAE / 13 Department of Electronics and Automatization, Universidad Autónoma de Manizales, Manizales, Colombia.ORCID http://orcid.org/0000-0002-7016-7485
Jérôme GouzyLIPM, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0001-5695-4557
Benjamin PéretBPMP, Univ Montpellier, CNRS, INRAE, SupAgro, Montpellier, France. benjamin.peret@supagro.fr.ORCID http://orcid.org/0000-0003-1336-0796

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

White lupin (Lupinus albus L.) is an annual crop cultivated for its protein-rich seeds. It is adapted to poor soils due to the production of cluster roots, which are made of dozens of determinate lateral roots that drastically improve soil exploration and nutrient acquisition (mostly phosphate). Using long-read sequencing technologies, we provide a high-quality genome sequence of a cultivated accession of white lupin (2n = 50, 451 Mb), as well as de novo assemblies of a landrace and a wild relative. We describe a modern accession displaying increased soil exploration capacity through early establishment of lateral and cluster roots. We also show how seed quality may have been impacted by domestication in term of protein profiles and alkaloid content. The availability of a high-quality genome assembly together with companion genomic and transcriptomic resources will enable the development of modern breeding strategies to increase and stabilize white lupin yield.

Indexed as

Genome, PlantSequence Analysis, DNASoilAlkaloidsCentromereEcotypeEvolution, MolecularGene DosageGene DuplicationGenetic VariationGenomic Structural VariationLupinusModels, GeneticMolecular Sequence AnnotationPlant LeavesPlant ProteinsAlkaloidsPlant ProteinsSoil

Identifiers

PMID31980615
PMCPMC6981116

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.