Evidence map›Paper›PMID 31980614›Full record

ArticleNature communications2020

Disruption of the HIV-1 Envelope allosteric network blocks CD4-induced rearrangements.

Rory Henderson, Maolin Lu, Ye Zhou, Zekun Mu, Robert Parks, Qifeng Han, Allen L Hsu, Elizabeth Carter, Scott C Blanchard, R J Edwards and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 55 citations in OpenAlex.

  1. Trial
  2. Article
  3. Priming of Multiple HIV Neutralizing B Cell Precursors in Humans.medRxiv : the preprint server for health sciences · 2026
    Article
  4. Article
  5. Article
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  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Current approaches to HIV vaccine development: a narrative review.Journal of the International AIDS Society · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Rory HendersonDepartment of Medicine, Duke University School of Medicine, Durham, NC, 27710, USA. rory.henderson@duke.edu.ORCID http://orcid.org/0000-0002-4301-6382
Maolin LuDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT, 06536, USA.
Ye ZhouDepartment of Computer Science, Duke University, Durham, NC, 27708, USA.
Zekun MuDepartment of Immunology, Duke University School of Medicine, Durham, NC, 27710, USA.ORCID http://orcid.org/0000-0003-4093-8346
Robert ParksDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC, 27710, USA.
Qifeng HanDepartment of Medicine, Duke University School of Medicine, Durham, NC, 27710, USA.ORCID http://orcid.org/0000-0002-3409-0476
Allen L HsuGenome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, NC, 27709, USA.ORCID http://orcid.org/0000-0003-2065-3802
Elizabeth CarterDepartment of Medicine, Duke University School of Medicine, Durham, NC, 27710, USA.
Scott C BlanchardDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021, USA.ORCID http://orcid.org/0000-0003-2717-9365
R J EdwardsDepartment of Medicine, Duke University School of Medicine, Durham, NC, 27710, USA.
Kevin WieheDepartment of Medicine, Duke University School of Medicine, Durham, NC, 27710, USA.
Kevin O SaundersDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC, 27710, USA.ORCID http://orcid.org/0000-0001-7399-7954
Mario J BorgniaGenome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, NC, 27709, USA.
Alberto BartesaghiDepartment of Computer Science, Duke University, Durham, NC, 27708, USA.
Walther MothesDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT, 06536, USA.
Barton F HaynesDepartment of Medicine, Duke University School of Medicine, Durham, NC, 27710, USA.
Priyamvada AcharyaDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC, 27710, USA. priyamvada.acharya@duke.edu.
S Munir AlamDepartment of Medicine, Duke University School of Medicine, Durham, NC, 27710, USA. munir.alam@duke.edu.
Duke University · USNational Institutes of Health · USYale University · USSt. Jude Children's Research Hospital · US

Funding

Virus biology scientific research support componentUM1AI100645 · NIAID · DUKE UNIVERSITY · PI MCMICHAEL, ANDREW JAMES · 2012 to 2018
$204.7M
Social and Behavioral Sciences CoreP30AI064518 · NIAID · DUKE UNIVERSITY · PI Nwora Lance Okeke · 2005 to 2026
$50.5M
NIEHS Cryo-EM Core FacilityZICES103326 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI BORGNIA, MARIO · 2017 to 2025
$17.0M
Ruth L. Kirschstein National Research Service Award (NRSA)- T32T32AI007392 · NIAID · DUKE UNIVERSITY · PI Amy Lynn Corneli, Guido Ferrari · 1990 to 2026
$9.8M
Targeting early metastable intermediates of the SARS-CoV-2 spike for vaccine and therapeutics developmentR01AI145687 · NIAID · DUKE UNIVERSITY · PI Priyamvada Acharya · 2019 to 2026
$6.9M
HIV-1 Env structure and function assessed by parallel smFRET and cryoETR01AI150560 · NIAID · YALE UNIVERSITY · PI BLANCHARD, SCOTT C, LIU, JUN · 2019 to 2022
$3.4M
Next-generation Fluorescent Probes for Biological ResearchR01GM098859 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI BLANCHARD, SCOTT C · 2012 to 2019
$2.9M
Data commons for 'omic, microscopy and analysis core facilitiesS10OD018164 · OD · DUKE UNIVERSITY · PI WRAY, GREGORY A. · 2014 to 2014
$598k
Intramural NIH HHS ZIC ES103326NIAID NIH HHS P30 AI064518NIAID NIH HHS R01 AI145687NIAID NIH HHS R01 AI150560NIAID NIH HHS T32 AI007392NIAID NIH HHS UM1 AI100645NIGMS NIH HHS R01 GM098859NIH HHS S10 OD018164
6 · The paper itself

Abstract

The trimeric HIV-1 Envelope protein (Env) mediates viral-host cell fusion via a network of conformational transitions, with allosteric elements in each protomer orchestrating host receptor-induced exposure of the co-receptor binding site and fusion elements. To understand the molecular details of this allostery, here, we introduce Env mutations aimed to prevent CD4-induced rearrangements in the HIV-1 BG505 Env trimer. Binding analysis and single-molecule Förster Resonance Energy Transfer confirm that these mutations prevent CD4-induced transitions of the HIV-1 Env. Structural analysis by single-particle cryo-electron microscopy performed on the BG505 SOSIP mutant Env proteins shows rearrangements in the gp120 topological layer contacts with gp41. Displacement of a conserved tryptophan (W571) from its typical pocket in these Env mutants renders the Env insensitive to CD4 binding. These results reveal the critical function of W571 as a conformational switch in Env allostery and receptor-mediated viral entry and provide insights on Env conformation that are relevant for vaccine design.

Indexed as

Allosteric RegulationAmino Acid SequenceCD4 Antigensenv Gene Products, Human Immunodeficiency VirusHIV-1HumansModels, MolecularMutant ProteinsMutationProtein BindingProtein DomainsProtein MultimerizationProtein StabilitySolubilityTemperatureCD4 Antigensenv Gene Products, Human Immunodeficiency Virusgp140 envelope protein, Human immunodeficiency virus 1Mutant Proteins

Identifiers

PMID31980614
PMCPMC6981184
OpenAlexW3002297978

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.