Evidence map›Paper›PMID 31980598›Full record

ArticleNature communications2020

The proteasome 19S cap and its ubiquitin receptors provide a versatile recognition platform for substrates.

Kirby Martinez-Fonts, Caroline Davis, Takuya Tomita, Suzanne Elsasser, Andrew R Nager, Yuan Shi, Daniel Finley, Andreas Matouschek

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
8.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 163 citations in OpenAlex.

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  13. ALFA nanobody-guided endogenous labeling.Nature chemical biology · 2025
    Article
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41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Kirby Martinez-FontsDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA.
Caroline DavisDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA.ORCID http://orcid.org/0000-0002-6765-7491
Takuya TomitaDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA.
Suzanne ElsasserDepartment of Cell Biology, Harvard Medical School, Boston, MA, 02115, USA.
Andrew R NagerDepartment of Biology, Massachusetts Institute of Technology, Boston, MA, 02139, USA.
Yuan ShiDepartment of Cell Biology, Harvard Medical School, Boston, MA, 02115, USA.
Daniel FinleyDepartment of Cell Biology, Harvard Medical School, Boston, MA, 02115, USA. daniel_finley@hms.harvard.edu.
Andreas MatouschekDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA. matouschek@austin.utexas.edu.ORCID http://orcid.org/0000-0001-6016-2341
The University of Texas at Austin · USHarvard University · USMassachusetts Institute of Technology · US

Funding

UBIQUITIN-PROTEIN CONJUGATES AND FUSIONSR01GM043601 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI FINLEY, DANIEL J · 1990 to 2020
$4.3M
Deciphering a second component to the proteasomal degradation codeR01GM124501 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MATOUSCHEK, ANDREAS · 2017 to 2020
$1.6M
Development of proteasome adaptors to catalytically deplete specific proteins from cellsR21CA196456 · NCI · UNIVERSITY OF TEXAS AT AUSTIN · PI MATOUSCHEK, ANDREAS · 2016 to 2018
$597k
NCI NIH HHS R21 CA196456NIGMS NIH HHS R01 GM043601NIGMS NIH HHS R01 GM124501
6 · The paper itself

Abstract

Proteins are targeted to the proteasome by the attachment of ubiquitin chains, which are markedly varied in structure. Three proteasome subunits-Rpn10, Rpn13, and Rpn1-can recognize ubiquitin chains. Here we report that proteins with single chains of K48-linked ubiquitin are targeted for degradation almost exclusively through binding to Rpn10. Rpn1 can act as a co-receptor with Rpn10 for K63 chains and for certain other chain types. Differences in targeting do not correlate with chain affinity to receptors. Surprisingly, in steady-state assays Rpn13 retarded degradation of various single-chain substrates. Substrates with multiple short ubiquitin chains can be presented for degradation by any of the known receptors, whereas those targeted to the proteasome through a ubiquitin-like domain are degraded most efficiently when bound by Rpn13 or Rpn1. Thus, the proteasome provides an unexpectedly versatile binding platform that can recognize substrates targeted for degradation by ubiquitin chains differing greatly in length and topology.

Indexed as

Binding SitesKineticsModels, MolecularProteasome Endopeptidase ComplexProtein SubunitsProteolysisSaccharomyces cerevisiae ProteinsSubstrate SpecificityUbiquitinProteasome Endopeptidase ComplexProtein SubunitsRPN10 protein, S cerevisiaeRPN13 protein, S cerevisiaeRPN1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitin

Identifiers

PMID31980598
PMCPMC6981147
OpenAlexW3002503982

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.