Evidence map›Paper›PMID 31977216›Full record

ArticleJournal of chemical information and modeling2020

Boosting Tree-Assisted Multitask Deep Learning for Small Scientific Datasets.

Jian Jiang, Rui Wang, Menglun Wang, Kaifu Gao, Duc Duy Nguyen, Guo-Wei Wei

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Trial
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  9. Leveraging Machine Learning for Size and Shape Analysis of Nanoparticles: A Shortcut to Electron Microscopy.The journal of physical chemistry. C, Nanomaterials and interfaces · 2024
    Article
  10. Integrated Molecular Modeling and Machine Learning for Drug Design.Journal of chemical theory and computation · 2023
    Review
  11. Deep learning-mediated prediction of concealed accessory pathway based on sinus rhythmic electrocardiograms.Annals of noninvasive electrocardiology : the official journal of the International Society for Holter and Noninvasive Electrocardiology, Inc · 2023
    Article
  12. Review
  13. Review
  14. Article
  15. Multiscale Laplacian Learning.Applied intelligence (Dordrecht, Netherlands) · 2023
    Article
  16. Article
  17. Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jian JiangResearch Center of Nonlinear Science, College of Mathematics and Computer Science, Engineering Research Center of Hubei Province for Clothing Information, Wuhan Textile University, Wuhan, 430200, P R. China.
Rui WangDepartment of Mathematics, Michigan State University, East Lansing, Michigan 48824, United States.
Menglun WangDepartment of Mathematics, Michigan State University, East Lansing, Michigan 48824, United States.
Kaifu GaoDepartment of Mathematics, Michigan State University, East Lansing, Michigan 48824, United States.
Duc Duy NguyenDepartment of Mathematics, Michigan State University, East Lansing, Michigan 48824, United States.
Guo-Wei WeiDepartment of Mathematics, Michigan State University, East Lansing, Michigan 48824, United States.ORCID 0000-0002-5781-2937

Funding

Synergistic integration of topology and machine learning for the predictions of protein-ligand binding affinities and mutation impactsR01GM126189 · NIGMS · MICHIGAN STATE UNIVERSITY · PI WEI, GUOWEI · 2018 to 2021
$1.4M
NIGMS NIH HHS R01 GM126189
6 · The paper itself

Abstract

Machine learning approaches have had tremendous success in various disciplines. However, such success highly depends on the size and quality of datasets. Scientific datasets are often small and difficult to collect. Currently, improving machine learning performance for small scientific datasets remains a major challenge in many academic fields, such as bioinformatics or medical science. Gradient boosting decision tree (GBDT) is typically optimal for small datasets, while deep learning often performs better for large datasets. This work reports a boosting tree-assisted multitask deep learning (BTAMDL) architecture that integrates GBDT and multitask deep learning (MDL) to achieve near-optimal predictions for small datasets when there exists a large dataset that is well correlated to the small datasets. Two BTAMDL models are constructed, one utilizing purely MDL output as GBDT input while the other admitting additional features in GBDT input. The proposed BTAMDL models are validated on four categories of datasets, including toxicity, partition coefficient, solubility, and solvation. It is found that the proposed BTAMDL models outperform the current state-of-the-art methods in various applications involving small datasets.

Indexed as

Deep LearningComputational BiologyMachine LearningSolubility

Identifiers

PMID31977216
PMCPMC7350172

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.