Evidence map›Paper›PMID 31977203›Full record

ArticleBiochemistry2020

Interactions between Viperin, Vesicle-Associated Membrane Protein A, and Hepatitis C Virus Protein NS5A Modulate Viperin Activity and NS5A Degradation.

Soumi Ghosh, Ayesha M Patel, Timothy J Grunkemeyer, Arti B Dumbrepatil, Kelcie Zegalia, Robert T Kennedy, E Neil G Marsh

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. Molecular regulation of calcium-sensing receptor (CaSR)-mediated signaling.Chronic diseases and translational medicine · 2024
    Review
  3. Article
  4. Article
  5. Emerging role of lipophagy in liver disorders.Molecular and cellular biochemistry · 2024
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Soumi Ghosh
Ayesha M Patel
Timothy J Grunkemeyer
Arti B Dumbrepatil
Kelcie Zegalia
University of Michigan · US

Funding

Understanding hydrogen atom transfer reactions in enzymesR01GM093088 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARSH, E NEIL · 2010 to 2023
$3.5M
MICROELECTRODE AND MICRODIALYSIS-BASED INSULIN SENSORSR01DK046960 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KENNEDY, ROBERT T · 1993 to 2020
$3.3M
Design and Use of Methods for Peptide Secretion Studies - Diversity SupplementR37DK046960 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KENNEDY, ROBERT T · 2006 to 2015
$3.0M
NIDDK NIH HHS R01 DK046960NIDDK NIH HHS R37 DK046960NIGMS NIH HHS R01 GM093088
6 · The paper itself

Abstract

The radical SAM enzyme, viperin, exerts a wide range of antiviral effects through both the synthesis of the antiviral nucleotide 3'-deoxy-3',4'-didehydro-CTP (ddhCTP) and through its interactions with various cellular and viral proteins. Here we investigate the interaction of viperin with hepatitis C virus nonstructural protein 5A (NS5A) and the host sterol regulatory protein, vesicle-associated membrane protein A (VAP-33). NS5A and VAP-33 form part of the viral replication complex that is essential for replicating the RNA genome of the hepatitis C virus. Using transfected enzymes in HEK293T cells, we show that viperin binds independently to both NS5A and the C-terminal domain of VAP-33 (VAP-33C) and that this interaction is dependent on the proteins being colocalized to the ER membrane. Coexpression of VAP-33C and NS5A resulted in changes to the catalytic activity of viperin that depended upon viperin being colocalized to the ER membrane. The viperin-NS5A-VAP-33C complex exhibited the lowest specific activity, indicating that NS5A may inhibit viperin's ability to synthesize ddhCTP. Coexpression of viperin with NS5A was also found to significantly reduce cellular NS5A levels, most likely by increasing the rate of proteasomal degradation. An inactive mutant of viperin, unable to bind the iron-sulfur cluster, was similarly effective at reducing cellular NS5A levels.

Indexed as

ProteolysisAmino Acid SequenceEnzyme ActivationHEK293 CellsHepacivirusHumansOxidoreductases Acting on CH-CH Group DonorsProtein BindingProteinsProtein Structure, SecondaryRNA-Dependent RNA PolymeraseVesicular Transport ProteinsViperin ProteinViral Core ProteinsViral Nonstructural ProteinsVirus ReplicationNS-5 protein, hepatitis C virusOxidoreductases Acting on CH-CH Group DonorsProteinsRNA-Dependent RNA PolymeraseRSAD2 protein, humanVAPA protein, humanVesicular Transport ProteinsViperin ProteinViral Core ProteinsViral Nonstructural Proteins

Identifiers

PMID31977203
PMCPMC12207731
OpenAlexW3001287688

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.