Evidence map›Paper›PMID 31976581›Full record

ArticleAPMIS : acta pathologica, microbiologica, et immunologica Scandinavica2020

Hierarchical clustering of PI3K and MAPK pathway proteins in breast cancer intrinsic subtypes.

Dinja T Kruger, Mark Opdam, Joyce Sanders, Vincent van der Noort, Epie Boven, Sabine C Linn

Open access · hybridAbstract read
In one paragraph

Article in APMIS : acta pathologica, microbiologica, et immunologica Scandinavica, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Hierarchical clustering of PI3K and MAPK pathway proteins in breast cancer intrinsic subtypes.APMIS : acta pathologica, microbiologica, et immunologica Scandinavica · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Dinja T KrugerDepartment of Medical Oncology, Amsterdam UMC, Vrije Universiteit Amsterdam/Cancer Center Amsterdam, Amsterdam, The Netherlands.
Mark OpdamDivision of Molecular Pathology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Joyce SandersDepartment of Pathology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Vincent van der NoortDivision of Biometrics, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Epie BovenDepartment of Medical Oncology, Amsterdam UMC, Vrije Universiteit Amsterdam/Cancer Center Amsterdam, Amsterdam, The Netherlands.
Sabine C LinnDivision of Molecular Pathology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Oncode Institute · NLThe Netherlands Cancer Institute · NLAmsterdam University Medical Centers · NLVrije Universiteit Amsterdam · NL

Funding

TI Pharma T3-502
6 · The paper itself

Abstract

The phosphatidylinositol-3-kinase (PI3K) and mitogen-activated protein kinase (MAPK) pathways are frequently activated in breast cancer. We recently demonstrated the importance of analyzing multiple proteins as read-out for pathway activation in ER+/HER2- breast cancer, since single proteins are known to provide insufficient information. Here, we determined pathway activation in other primary breast cancer intrinsic subtypes derived from postmenopausal patients. Tumor blocks were recollected, and immunohistochemistry was performed using antibodies against PTEN, p-AKT(Thr308), p-AKT(Ser473), p-p70S6K, p-4EBP1, p-S6RP(Ser235/236) and p-ERK1/2, followed by unsupervised hierarchical clustering. In 32 ER+/HER2+, 37 ER-/HER2+ and 74 triple-negative breast cancer patients, subgroups were identified with preferentially activated (A) and preferentially not activated (N) proteins. These subgroups likely reflect tumors with differences in biological behavior as well as treatment outcome.

Indexed as

AgedBiomarkers, TumorErb-b2 Receptor Tyrosine KinasesFemaleHumansMitogen-Activated Protein KinasesPhosphatidylinositol 3-KinaseProto-Oncogene Proteins c-aktRibosomal Protein S6 Kinases, 70-kDaSignal TransductionTriple Negative Breast NeoplasmsBiomarkers, TumorErb-b2 Receptor Tyrosine KinasesMitogen-Activated Protein KinasesPhosphatidylinositol 3-KinaseProto-Oncogene Proteins c-aktRibosomal Protein S6 Kinases, 70-kDaBreast cancer intrinsic subtypesHER2-positive breast cancerhierarchical clusteringmitogen-activated protein kinasephosphatidylinositol-3-kinasetriple-negative breast cancer

Identifiers

PMID31976581
PMCPMC7317370
OpenAlexW3001479748

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.