Evidence map›Paper›PMID 31975050›Full record

ArticleGeroScience2020

Loss of vacuolar acidity results in iron-sulfur cluster defects and divergent homeostatic responses during aging in Saccharomyces cerevisiae.

Kenneth L Chen, Toby N Ven, Matthew M Crane, Matthew L C Brunner, Adrian K Pun, Kathleen L Helget, Katherine Brower, Dexter E Chen, Ha Doan, Justin D Dillard-Telm and 19 more

Abstract read
In one paragraph

Article in GeroScience, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Transcriptome Analysis and CFEM Gene Overexpression inPathogens (Basel, Switzerland) · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Iron Metabolism in Aging and Age-Related Diseases.International journal of molecular sciences · 2022
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Kenneth L ChenDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Toby N VenDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Matthew M CraneDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Matthew L C BrunnerDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Adrian K PunDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Kathleen L HelgetDepartment of Biology and Biotechnology, University of Houston-Clear Lake, Houston, TX, 77058, USA.
Katherine BrowerDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Dexter E ChenDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Ha DoanDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Justin D Dillard-TelmDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Ellen HuynhDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Yen-Chi FengDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Zili YanDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Alexandra GolubevaDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Roy A HsuDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Raheem KnightDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Jessie LevinDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Vesal MobasherDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Michael MuirDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Victor OmokehindeDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Corey ScrewsDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Esin TunaliDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Rachael K TranDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Luz ValdezDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Edward YangDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Scott R KennedyDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Alan J HerrDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Matt KaeberleinDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Brian M WaskoDepartment of Biology and Biotechnology, University of Houston-Clear Lake, Houston, TX, 77058, USA. wasko@uhcl.edu.ORCID 0000-0002-7090-086X

Funding

SPECIFICITY OF OXYGEN DNA DAMAGE AND MUTAGENESISP01AG001751 · NIA · UNIVERSITY OF WASHINGTON · PI PRUSKY, GLEN THOMAS · 1985 to 2021
$29.6M
University of Washington Nathan Shock Center of Excellence in the Basic Biology of AgingP30AG013280 · NIA · UNIVERSITY OF WASHINGTON · PI Maitreya J Dunham · 1995 to 2026
$27.1M
GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
Emergent properties of signaling network degradation that mediate homeostatic failure during agingR01AG056359 · NIA · UNIVERSITY OF WASHINGTON · PI KAEBERLEIN, MATT, VILLEN, JUDIT · 2017 to 2021
$2.9M
Volatility of mutator phenotypes at single cell resolutionR01GM118854 · NIGMS · UNIVERSITY OF WASHINGTON · PI KENNEDY, SCOTT ROBERT · 2016 to 2020
$1.5M
Whole-lifespan monitoring of yeast healthF30AG052225 · NIA · UNIVERSITY OF WASHINGTON · PI CHEN, KENNETH · 2016 to 2019
$179k
NIA NIH HHS F30AG052225NIA NIH HHS P01 AG001751NIA NIH HHS P30 AG013280NIA NIH HHS P30AG013280NIA NIH HHS R01AG056359NIA NIH HHS T32 AG000057NIA NIH HHS T32AG000057NIGMS NIH HHS R01 GM118854NIGMS NIH HHS R01GM118854
6 · The paper itself

Abstract

The loss of vacuolar/lysosomal acidity is an early event during aging that has been linked to mitochondrial dysfunction. However, it is unclear how loss of vacuolar acidity results in age-related dysfunction. Through unbiased genetic screens, we determined that increased iron uptake can suppress the mitochondrial respiratory deficiency phenotype of yeast vma mutants, which have lost vacuolar acidity due to genetic disruption of the vacuolar ATPase proton pump. Yeast vma mutants exhibited nuclear localization of Aft1, which turns on the iron regulon in response to iron-sulfur cluster (ISC) deficiency. This led us to find that loss of vacuolar acidity with age in wild-type yeast causes ISC defects and a DNA damage response. Using microfluidics to investigate aging at the single-cell level, we observe grossly divergent trajectories of iron homeostasis within an isogenic and environmentally homogeneous population. One subpopulation of cells fails to mount the expected compensatory iron regulon gene expression program, and suffers progressively severe ISC deficiency with little to no activation of the iron regulon. In contrast, other cells show robust iron regulon activity with limited ISC deficiency, which allows extended passage and survival through a period of genomic instability during aging. These divergent trajectories suggest that iron regulation and ISC homeostasis represent a possible target for aging interventions.

Indexed as

HomeostasisIronSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSulfurIronSaccharomyces cerevisiae ProteinsSulfurAgingDNA damageGeroscienceIron-sulfur clustersLysosomal acidityVacuolar acidityYeast replicative lifespan

Identifiers

PMID31975050
PMCPMC7205917

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.