Evidence map›Paper›PMID 31974649›Full record

ArticleBiotechnology letters2020

A set of Yarrowia lipolytica CRISPR/Cas9 vectors for exploiting wild-type strain diversity.

Macarena Larroude, Heykel Trabelsi, Jean-Marc Nicaud, Tristan Rossignol

Open access · hybridAbstract read
In one paragraph

Article in Biotechnology letters, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 50 citations in OpenAlex.

  1. 10 years of CRISPR/CAS genomic engineering in Yarrowia lipolytica.Bioprocess and biosystems engineering · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Development of genetic markers in Yarrowia lipolytica.Applied microbiology and biotechnology · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Engineering 3-Hydroxypropionic Acid Production from Glucose inJournal of fungi (Basel, Switzerland) · 2023
    Article
  12. Article
  13. Article
  14. A review of synthetic biology tools in Yarrowia lipolytica.World journal of microbiology & biotechnology · 2023
    Review
  15. Article
  16. Review
  17. Article
  18. Molecules (Basel, Switzerland) · 2022
    Review
  19. Article
  20. Journal of fungi (Basel, Switzerland) · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Macarena LarroudeUniversité Paris-Saclay, INRAE, Micalis Institute, 78350, Jouy-en-Josas, AgroParisTech, France.
Heykel TrabelsiUniversité Paris-Saclay, INRAE, Micalis Institute, 78350, Jouy-en-Josas, AgroParisTech, France.
Jean-Marc NicaudUniversité Paris-Saclay, INRAE, Micalis Institute, 78350, Jouy-en-Josas, AgroParisTech, France.
Tristan RossignolUniversité Paris-Saclay, INRAE, Micalis Institute, 78350, Jouy-en-Josas, AgroParisTech, France. tristan.rossignol@inrae.fr.ORCID http://orcid.org/0000-0003-0718-0684
Université Paris-Saclay · FR

Funding

Horizon 2020 720824
6 · The paper itself

Abstract

objectivesThe construction and validation of a set of Yarrowia lipolytica CRISPR/Cas9 vectors containing six different markers that allows virtually any genetic background to be edited, including those of wild-type strains.

resultsUsing the Golden Gate method, we assembled a set of six CRISPR/Cas9 vectors, each containing a different selection marker, to be used for editing the genome of the industrial yeast Y. lipolytica. This vector set is available via Addgene. Any guide RNA (gRNA) sequence can be easily and rapidly introduced in any of these vectors using Golden Gate assembly. We successfully edited six different genes in a variety of genetic backgrounds, including those of wild-type strains, with five of the six vectors. Use of these vectors strongly improved homologous recombination and cassette integration at a specific locus.

conclusionsWe have created a versatile and modular set of CRISPR/Cas9 vectors that will allow any Y. lipolytica strain to be rapidly edited; this tool will facilitate experimentation with any prototroph wild-type strains displaying interesting features.

Indexed as

CRISPR-Cas SystemsFungal ProteinsGene EditingHomologous RecombinationMutationRNA, Guide, CRISPR-Cas SystemsYarrowiaFungal ProteinsRNA, Guide, CRISPR-Cas SystemsCRISPR/Cas9Golden GateGSY1Synthetic biologyYarrowia lipolytica

Identifiers

PMID31974649
PMCPMC7101291
OpenAlexW3002407239

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.