Evidence map›Paper›PMID 31974448›Full record

ArticleScientific reports2020

Small stepping motion of processive dynein revealed by load-free high-speed single-particle tracking.

Jun Ando, Tomohiro Shima, Riko Kanazawa, Rieko Shimo-Kon, Akihiko Nakamura, Mayuko Yamamoto, Takahide Kon, Ryota Iino

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Direct observation of stepping rotation of V-ATPase reveals rigid component in coupling between VProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Review
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Jun AndoInstitute for Molecular Science, National Institutes of Natural Sciences, Okazaki, 444-8787, Aichi, Japan.
Tomohiro ShimaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Hongo, 113-0033, Tokyo, Japan.
Riko KanazawaDepartment of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka, 560-0043, Japan.
Rieko Shimo-KonDepartment of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka, 560-0043, Japan.
Akihiko NakamuraInstitute for Molecular Science, National Institutes of Natural Sciences, Okazaki, 444-8787, Aichi, Japan.
Mayuko YamamotoInstitute for Molecular Science, National Institutes of Natural Sciences, Okazaki, 444-8787, Aichi, Japan.
Takahide KonDepartment of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka, 560-0043, Japan.
Ryota IinoInstitute for Molecular Science, National Institutes of Natural Sciences, Okazaki, 444-8787, Aichi, Japan. iino@ims.ac.jp.
Osaka University · JPInstitute for Molecular Science · JPThe Graduate University for Advanced Studies, SOKENDAI · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytoplasmic dynein is a dimeric motor protein which processively moves along microtubule. Its motor domain (head) hydrolyzes ATP and induces conformational changes of linker, stalk, and microtubule binding domain (MTBD) to trigger stepping motion. Here we applied scattering imaging of gold nanoparticle (AuNP) to visualize load-free stepping motion of processive dynein. We observed artificially-dimerized chimeric dynein, which has the head, linker, and stalk from Dictyostelium discoideum cytoplasmic dynein and the MTBD from human axonemal dynein, whose structure has been well-studied by cryo-electron microscopy. One head of a dimer was labeled with 30 nm AuNP, and stepping motions were observed with 100 μs time resolution and sub-nanometer localization precision at physiologically-relevant 1 mM ATP. We found 8 nm forward and backward steps and 5 nm side steps, consistent with on- and off-axes pitches of binding cleft between αβ-tubulin dimers on the microtubule. Probability of the forward step was 1.8 times higher than that of the backward step, and similar to those of the side steps. One-head bound states were not clearly observed, and the steps were limited by a single rate constant. Our results indicate dynein mainly moves with biased small stepping motion in which only backward steps are slightly suppressed.

Indexed as

Axonemal DyneinsBiochemical PhenomenaCryoelectron MicroscopyCytoplasmic DyneinsDictyosteliumGoldHumansMetal NanoparticlesMicrotubulesProtein BindingProtozoan ProteinsTubulinAxonemal DyneinsCytoplasmic DyneinsGoldProtozoan ProteinsTubulin

Identifiers

PMID31974448
PMCPMC6978368
OpenAlexW3001309462

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.