Evidence map›Paper›PMID 31974402›Full record

ArticleNature communications2020

Structural basis of p62/SQSTM1 helical filaments and their role in cellular cargo uptake.

Arjen J Jakobi, Stefan T Huber, Simon A Mortensen, Sebastian W Schultz, Anthimi Palara, Tanja Kuhm, Birendra Kumar Shrestha, Trond Lamark, Wim J H Hagen, Matthias Wilmanns and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 121 citations in OpenAlex.

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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Arjen J JakobiEuropean Molecular Biology Laboratory (EMBL), Structural and Computational Biology Unit, Meyerhofstraße 1, 69117, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-7761-2027
Stefan T Huber *European Molecular Biology Laboratory (EMBL), Structural and Computational Biology Unit, Meyerhofstraße 1, 69117, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-3721-5104
Simon A Mortensen *European Molecular Biology Laboratory (EMBL), Structural and Computational Biology Unit, Meyerhofstraße 1, 69117, Heidelberg, Germany.
Sebastian W SchultzDepartment of Molecular Cell Biology, Institute for Cancer Research, Oslo University Hospital, Montebello, N-0379, Oslo, Norway.
Anthimi PalaraMolecular Cancer Research Group, Institute of Medical Biology, University of Tromsø - The Arctic University of Norway, 9037, Tromsø, Norway.
Tanja KuhmEuropean Molecular Biology Laboratory (EMBL), Structural and Computational Biology Unit, Meyerhofstraße 1, 69117, Heidelberg, Germany.
Birendra Kumar ShresthaMolecular Cancer Research Group, Institute of Medical Biology, University of Tromsø - The Arctic University of Norway, 9037, Tromsø, Norway.
Trond LamarkMolecular Cancer Research Group, Institute of Medical Biology, University of Tromsø - The Arctic University of Norway, 9037, Tromsø, Norway.ORCID http://orcid.org/0000-0001-6338-3342
Wim J H HagenEuropean Molecular Biology Laboratory (EMBL), Structural and Computational Biology Unit, Meyerhofstraße 1, 69117, Heidelberg, Germany.
Matthias WilmannsEuropean Molecular Biology Laboratory (EMBL), Hamburg Unit c/o DESY, Notkestraße 85, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0002-4643-5435
Terje JohansenMolecular Cancer Research Group, Institute of Medical Biology, University of Tromsø - The Arctic University of Norway, 9037, Tromsø, Norway.ORCID http://orcid.org/0000-0003-1451-9578
Andreas BrechDepartment of Molecular Cell Biology, Institute for Cancer Research, Oslo University Hospital, Montebello, N-0379, Oslo, Norway.
Carsten SachseEuropean Molecular Biology Laboratory (EMBL), Structural and Computational Biology Unit, Meyerhofstraße 1, 69117, Heidelberg, Germany. c.sachse@fz-juelich.de.ORCID http://orcid.org/0000-0002-1168-5143
UiT The Arctic University of Norway · NOEuropean Molecular Biology Laboratory · DEEuropean Molecular Biology Laboratory · DEForschungszentrum Jülich · DEOslo University Hospital · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

p62/SQSTM1 is an autophagy receptor and signaling adaptor with an N-terminal PB1 domain that forms the scaffold of phase-separated p62 bodies in the cell. The molecular determinants that govern PB1 domain filament formation in vitro remain to be determined and the role of p62 filaments inside the cell is currently unclear. We here determine four high-resolution cryo-EM structures of different human and Arabidopsis PB1 domain assemblies and observed a filamentous ultrastructure of p62/SQSTM1 bodies using correlative cellular EM. We show that oligomerization or polymerization, driven by a double arginine finger in the PB1 domain, is a general requirement for lysosomal targeting of p62. Furthermore, the filamentous assembly state of p62 is required for autophagosomal processing of the p62-specific cargo KEAP1. Our results show that using such mechanisms, p62 filaments can be critical for cargo uptake in autophagy and are an integral part of phase-separated p62 bodies.

Indexed as

Arabidopsis ProteinsArginineAutophagyCarrier ProteinsCryoelectron MicroscopyCrystallography, X-RayHeLa CellsHumansKelch-Like ECH-Associated Protein 1LysosomesPolymerizationProtein ConformationProtein DomainsSequestosome-1 ProteinArabidopsis ProteinsArginineCarrier ProteinsKEAP1 protein, humanKelch-Like ECH-Associated Protein 1NBR1 protein, ArabidopsisSequestosome-1 ProteinSQSTM1 protein, human

Identifiers

PMID31974402
PMCPMC6978347
OpenAlexW3002026331

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.