Evidence map›Paper›PMID 31974362›Full record

ArticleNature communications2020

Chaperone mediated detection of small molecule target binding in cells.

Kelvin F Cho, Taylur P Ma, Christopher M Rose, Donald S Kirkpatrick, Kebing Yu, Robert A Blake

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kelvin F ChoDepartment of Biochemical and Cellular Pharmacology, Genentech Inc., South San Francisco, CA, 94080, USA.
Taylur P MaDepartment of Microchemistry, Proteomics & Lipidomics, Genentech Inc., South San Francisco, CA, 94080, USA.
Christopher M RoseDepartment of Microchemistry, Proteomics & Lipidomics, Genentech Inc., South San Francisco, CA, 94080, USA.ORCID http://orcid.org/0000-0002-7502-3368
Donald S KirkpatrickDepartment of Microchemistry, Proteomics & Lipidomics, Genentech Inc., South San Francisco, CA, 94080, USA.ORCID http://orcid.org/0000-0003-3091-2804
Kebing YuDepartment of Microchemistry, Proteomics & Lipidomics, Genentech Inc., South San Francisco, CA, 94080, USA.
Robert A BlakeDepartment of Biochemical and Cellular Pharmacology, Genentech Inc., South San Francisco, CA, 94080, USA. blake.robert@gene.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability to quantitatively measure a small molecule's interactions with its protein target(s) is crucial for both mechanistic studies of signaling pathways and in drug discovery. However, current methods to achieve this have specific requirements that can limit their application or interpretation. Here we describe a complementary target-engagement method, HIPStA (Heat Shock Protein Inhibition Protein Stability Assay), a high-throughput method to assess small molecule binding to endogenous, unmodified target protein(s) in cells. The methodology relies on the change in protein turnover when chaperones, such as HSP90, are inhibited and the stabilization effect that drug-target binding has on this change. We use HIPStA to measure drug binding to three different classes of drug targets (receptor tyrosine kinases, nuclear hormone receptors, and cytoplasmic protein kinases), via quantitative fluorescence imaging. We further demonstrate its utility by pairing the method with quantitative mass spectrometry to identify previously unknown targets of a receptor tyrosine kinase inhibitor.

Indexed as

BenzoquinonesBridged Bicyclo Compounds, HeterocyclicCell Line, TumorErb-b2 Receptor Tyrosine KinasesEstrogen Receptor alphaFluorescent Antibody TechniqueHigh-Throughput Screening AssaysHSP90 Heat-Shock ProteinsHumansHydroxybutyratesLactams, MacrocyclicMass SpectrometryMolecular ChaperonesNuclear ProteinsProtein StabilityProteomeBenzoquinonesBridged Bicyclo Compounds, HeterocyclicERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesESR1 protein, humanEstrogen Receptor alphaHSP90 Heat-Shock ProteinsHydroxybutyratesLactams, MacrocyclicMolecular ChaperonesN-(2-(4-((3-chloro-4-(3-(trifluoromethyl)phenoxy)phenyl)amino)-5H-pyrrolo(3,2-d)pyrimidin-5-yl)ethyl)-3-hydroxy-3-methylbutanamideNuclear ProteinsProteomeProto-Oncogene Proteins c-rafRaf1 protein, humanSmall Molecule LibrariestanespimycinTSSC3 protein

Identifiers

PMID31974362
PMCPMC6978363

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.