Evidence map›Paper›PMID 31972605›Full record

ArticleAIDS (London, England)2020

Plasma and antibody glycomic biomarkers of time to HIV rebound and viral setpoint.

Leila B Giron, Emmanouil Papasavvas, Livio Azzoni, Xiangfan Yin, Alitzel Anzurez, Mohammad Damra, Karam Mounzer, Jay R Kostman, Ian Sanne, Cynthia S Firnhaber and 4 more

Abstract read
In one paragraph

Article in AIDS (London, England), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Trial
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. High-Throughput Glycomic Methods.Chemical reviews · 2022
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Sialyl-LewisCell reports · 2020
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Leila B GironThe Wistar Institute.
Emmanouil PapasavvasThe Wistar Institute.
Livio AzzoniThe Wistar Institute.
Xiangfan YinThe Wistar Institute.
Alitzel AnzurezThe Wistar Institute.
Mohammad DamraThe Wistar Institute.
Karam MounzerPhiladelphia FIGHT, Philadelphia, Pennsylvania, USA.
Jay R KostmanPhiladelphia FIGHT, Philadelphia, Pennsylvania, USA.
Ian SanneUniversity of the Witwatersrand, Johannesburg, South Africa.
Cynthia S FirnhaberUniversity of Colorado School of Medicine, Colorado, USA.
Hiroaki TatenoNational Institute of Advanced Industrial Science and Technology (AIST), Japan.
Qin LiuThe Wistar Institute.
Luis J MontanerThe Wistar Institute.
Mohamed Abdel-MohsenThe Wistar Institute.

Funding

Role of Intestinal Barrier Integrity in Modulating the Host Glycome During COVID-19R01DK123733 · NIDDK · WISTAR INSTITUTE · PI ABDEL MOHSEN, MOHAMED, KESHAVARZIAN, ALI · 2020 to 2024
$4.5M
Sialic Acid Modulation of HIV-associated Chronic InflammagingR01AG062383 · NIA · WISTAR INSTITUTE · PI ABDEL MOHSEN, MOHAMED · 2019 to 2023
$3.0M
HIV Therapy &Interruption RCT in Resource Poor ClinicU01AI051986 · NIAID · WISTAR INSTITUTE · PI MONTANER, LUIS J · 2005 to 2010
$3.0M
IMMUNE AND VIRAL OUTCOMES OF HIV-1 THERAPY INTERRUPTIONR01AI048398 · NIAID · WISTAR INSTITUTE · PI MONTANER, LUIS J. · 2000 to 2003
$2.4M
Exploring Cell-free Glycomic Interactions in HIV-associated Neurological DisordersR21NS106970 · NINDS · WISTAR INSTITUTE · PI ABDEL MOHSEN, MOHAMED, NDHLOVU, LISHOMWA C · 2017 to 2018
$507k
Role of Host Glycosylation in the Galectin-9-Mediated Reversal of HIV LatencyR21AI129636 · NIAID · WISTAR INSTITUTE · PI ABDEL MOHSEN, MOHAMED · 2017 to 2018
$496k
Host Glycomic Determinants of HIV Persistence in vivoR21AI143385 · NIAID · WISTAR INSTITUTE · PI ABDEL MOHSEN, MOHAMED · 2019 to 2020
$491k
NIAID NIH HHS R01 AI048398NIAID NIH HHS R21 AI129636NIAID NIH HHS R21 AI143385NIAID NIH HHS U01 AI051986NIA NIH HHS R01 AG062383NIDDK NIH HHS R01 DK123733NINDS NIH HHS R21 NS106970
6 · The paper itself

Abstract

objectiveHIV cure research urgently needs to identify pre-analytic treatment interruption (ATI) biomarkers of time-to-viral-rebound and viral setpoint to mitigate the risk of ATI and accelerate development of a cure. We previously reported that galactosylated IgG glycans, G2, negatively correlate with cell-associated HIV DNA and RNA during antiretroviral therapy (ART). We hypothesized that this and other plasma glycomic traits can predict time-to-viral-rebound and viral setpoint upon ART cessation.

designWe profiled the circulating glycomes (plasma and bulk IgG) of two geographically distinct cohorts: Philadelphia Cohort - 24 HIV-infected, ART-suppressed individuals who had participated in an open-ended ATI study without concurrent immunomodulatory agents. Johannesburg Cohort - 23 HIV-infected, ART-suppressed individuals who had participated in a 2-week ATI.

methodsCapillary electrophoresis and lectin microarray were used for glycomic analyses. Cox proportional-hazards model and log-rank test were used for statistical analyses.

resultsHigher pre-ATI levels of the IgG glycan, G2, were significantly associated with a longer time-to-viral-rebound (hazard ratio = 0.12, P = 0.05). In addition to G2, we identified several predictive glycomic traits in plasma, for example, levels of FA2BG1, a non-sialylated, core-fucosylated glycan, associated with a longer time-to-viral-rebound (hazard ratio = 0.023, P = 0.05), whereas FA2G2S1, a sialylated glycan, associated with a shorter time-to-viral-rebound (hazard ratio = 24.1, P = 0.028). Additionally, pre-ATI plasma glycomic signatures associated with a lower viral setpoint, for example, T-antigen (Galβ1-3GalNAc) (r = 0.75, P = 0.0007), or a higher viral setpoint, for example, polylactosamine (r = -0.58, P = 0.01). These results were initially validated in the Johannesburg Cohort.

conclusionWe describe first-in-class, non-invasive, plasma and IgG glycomic biomarkers that inform time-to-viral-rebound and viral setpoint in two geographically distinct cohorts.

Indexed as

Antiretroviral Therapy, Highly ActiveGlycomicsAnti-HIV AgentsBiomarkersHIV-1HIV InfectionsHumansRNA, ViralSouth AfricaViral LoadVirus ReplicationAnti-HIV AgentsBiomarkersRNA, Viral

Identifiers

PMID31972605
PMCPMC7072000

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.