ArticlePLoS computational biology2020
An educational guide for nanopore sequencing in the classroom.
Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
17 citing papers in PubMed.
- Using miniaturized laboratory equipment and DNA barcoding to improve conservation genetics training and identify illegally traded species.Conservation biology : the journal of the Society for Conservation Biology · 2026Article
- A cross-disciplinary hands-on genomics curriculum adaptable for high school to undergraduate education.Journal of microbiology & biology education · 2025Article
- Why and how to set up a Bioinformatics Learning Lab (BILL).PLoS computational biology · 2025Article
- Harnessing genomic technologies for one health solutions in the tropics.Globalization and health · 2024Review
- CRISPR/Cas9 gene targeting plus nanopore DNA sequencing with the plasmid pBR322 in the classroom.Journal of microbiology & biology education · 2024Article
- Food systems microbiome-related educational needs.Microbial biotechnology · 2023Article
- DNA sequencing in the classroom: complete genome sequence of two earwig (Dermaptera; Insecta) species.Biological research · 2023Article
- Utilisation of Oxford Nanopore sequencing to generate six complete gastropod mitochondrial genomes as part of a biodiversity curriculum.Scientific reports · 2022Article
- Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment.Nature protocols · 2022Review
- Nanopore sequencing in non-human forensic genetics.Emerging topics in life sciences · 2021Review
- Using alternative teaching and learning approaches to deliver clinical microbiology during the COVID-19 pandemic.FEMS microbiology letters · 2021Article
- Rapid nanopore-based DNA sequencing protocol of antibiotic-resistant bacteria for use in surveillance and outbreak investigation.Microbial genomics · 2021Article
- Optimizing experimental design for genome sequencing and assembly with Oxford Nanopore Technologies.GigaByte (Hong Kong, China) · 2021Article
- Engaging the next generation of plant geneticists through sustained research: an overview of a post-16 project.Heredity · 2020Review
- Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish (G3 (Bethesda, Md.) · 2020Article
- Education in the genomics era: Generating high-quality genome assemblies in university courses.GigaScience · 2020Article
- Inaugural nontuberculous mycobacterial lung disease education and research conference, Honolulu, Hawai'i, February 1-2, 2020.Microbes and infectionArticle
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The last decade has witnessed a remarkable increase in our ability to measure genetic information. Advancements of sequencing technologies are challenging the existing methods of data storage and analysis. While methods to cope with the data deluge are progressing, many biologists have lagged behind due to the fast pace of computational advancements and tools available to address their scientific questions. Future generations of biologists must be more computationally aware and capable. This means they should be trained to give them the computational skills to keep pace with technological developments. Here, we propose a model that bridges experimental and bioinformatics concepts using the Oxford Nanopore Technologies (ONT) sequencing platform. We provide both a guide to begin to empower the new generation of educators, scientists, and students in performing long-read assembly of bacterial and bacteriophage genomes and a standalone virtual machine containing all the required software and learning materials for the course.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.