Evidence map›Paper›PMID 31970451›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2020

The mutation of a PECTATE LYASE-LIKE gene is responsible for the Yellow Margin phenotype in potato.

Zhongmin Yang, Shuangshuang Feng, Die Tang, Lidong Zhang, Yumei Li, Philip Kear, Sanwen Huang, Chunzhi Zhang

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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Dissected Leaf 1 encodes an MYB transcription factor that controls leaf morphology in potato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  6. Frontiers in plant science · 2022
    Article
  7. Article
  8. RicePlants (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Zhongmin YangCollege of Horticulture, Northwest Agriculture and Forest University, Yangling, 712100, Shaanxi, China.
Shuangshuang FengCollege of Life Sciences, Nanjing Agricultural University, Nanjing, 210000, Jiangsu, China.
Die TangLingnan Guangdong Laboratory of Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518124, Guangdong, China.
Lidong ZhangThe AGIS-CAAS-YNNU Joint Academy of Potato Sciences, Yunnan Normal University, Kunming, 650500, Yunnan, China.
Yumei LiThe AGIS-CAAS-YNNU Joint Academy of Potato Sciences, Yunnan Normal University, Kunming, 650500, Yunnan, China.
Philip KearInternational Potato Center (CIP), CIP China Center Asia Pacific, Beijing, 100081, China.
Sanwen HuangLingnan Guangdong Laboratory of Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518124, Guangdong, China. huangsanwen@caas.cn.
Chunzhi ZhangLingnan Guangdong Laboratory of Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518124, Guangdong, China. zhangchunzhi01@caas.cn.ORCID http://orcid.org/0000-0003-0658-1398
Agricultural Genomics Institute at Shenzhen · CNYunnan Normal University · CNNanjing Agricultural University · CN

Funding

National Natural Science Foundation of China No. 31601360
6 · The paper itself

Abstract

key messageThe yellow margin (ym) gene was mapped to a 30-kb genomic region in potato and the mutation of a pectate lyase gene led to this phenotype. The practice of clonally propagating potato (Solanum tuberosum L.), which has been lasted for thousands of years, has caused the accumulation of deleterious alleles. Despite yellow margin (ym) being a common cause of a detrimental weak-vigor phenotype and reduced yield in diploid potato, the underlying gene has eluded discovery to date. In this paper, we mapped the ym gene to a 30-kb region containing four annotated genes. Among them, PGSC0003DMG402023481 encodes a pectate lyase-like gene (StPLL) with lower expression in ym plants than in the wild-type plants. PCR amplification confirmed a 4.1-kb deletion in the mutant allele of StPLL. Knockout of StPLL in diploid potato resulted in a similar phenotype with the ym plants. This study not only characterizes the ym allele but also provides the molecular tools to select and purge it from populations, while also deepening our understanding of the morphogenesis in potato.

Indexed as

Genes, PlantBase SequenceDiploidyGenetic Association StudiesInheritance PatternsMutationPhenotypePhysical Chromosome MappingPlant LeavesPolysaccharide-LyasesSolanum tuberosumpectate lyasePolysaccharide-Lyases

Identifiers

PMID31970451
OpenAlexW3000829120

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.