Evidence map›Paper›PMID 31969119›Full record

ArticleBMC medical genetics2020

Familial autosomal recessive bestrophinopathy: identification of a novel variant in BEST1 gene and the specific metabolomic profile.

Panpan Ye, Jia Xu, Yueqiu Luo, Zhitao Su, Ke Yao

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Panpan YeEye Center, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China.
Jia XuEye Center, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China.
Yueqiu LuoEye Center, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China.
Zhitao SuEye Center, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China.
Ke YaoEye Center, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China. xlren@zju.edu.cn.ORCID 0000-0002-6764-7365
Second Affiliated Hospital of Zhejiang University · CNHe Eye Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAutosomal recessive bestrophinopathy (ARB) is a retinal degenerative disorder caused by BEST1 mutations with autosomal recessive inheritance. We aim to map a comprehensive genomic and metabolomic profile of a consanguineous Chinese family with ARB.

methodsOphthalmic examinations were performed on the affected patients with ARB. The proband was screened for potential causative mutations in a panel with 256 known retinal disease genes by using target capture sequencing. The related mutation was further validated and segregated in the family members by Sanger sequencing. In silico prediction tools were used for pathogenicity assessment. A UHPLC-MS/MS metabolomic analysis was performed to explore the disease-associated metabolic feature.

resultsThe affected patients from this family were characterized by low vision, the presence of subretinal fluid, macular edema, and hyperopia with coincidental angle closure. DNA sequencing identified a novel missense mutation in the BEST1 gene c.646G > A (p.Val216Ile) of the proband. Sanger sequencing further confirmed the mutation. The missense mutation was co-segregation across the pedigree and predicted to be deleterious by SIFT (0.017). The blood metabolic profiles were highly similar among all family members probably because of the same lifestyle, habitat and genomic background. However, ARB patients presented a significant deregulation of metabolites, such as citric acid, L-Threonic acid, and eicosapentaenoic acid.

conclusionsWe identified a novel disease-associated variant in the BEST1 gene as well as a disease-specific metabolic feature in familial ARB. Our findings helped improve the understanding of ARB mechanisms.

Indexed as

BestrophinsChloride ChannelsElectroretinographyEye AbnormalitiesEye Diseases, HereditaryFemaleHumansMaleMutationMutation, MissensePedigreePhenotypeRetinaRetinal DiseasesRetinal DystrophiesSequence Analysis, DNABEST1 protein, humanBestrophinsChloride ChannelsAutosomal recessive bestrophinopathyBEST1MetabolomicsMutation

Identifiers

PMID31969119
PMCPMC6977271
OpenAlexW3007392766

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.