Evidence map›Paper›PMID 31968354›Full record

ArticleNature2020

Giant virus diversity and host interactions through global metagenomics.

Frederik Schulz, Simon Roux, David Paez-Espino, Sean Jungbluth, David A Walsh, Vincent J Denef, Katherine D McMahon, Konstantinos T Konstantinidis, Emiley A Eloe-Fadrosh, Nikos C Kyrpides and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Nature, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 210 papers.

0numbers the graph read from it
0cells of the map it votes in
210citing papers in PubMed
51.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

210 citing papers in PubMed, 377 citations in OpenAlex.

  1. Review
  2. Article
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  7. Giant viruses encode vitamin K-based redox modules for lipid modification.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  13. Review
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  19. The dual-origin hypothesis of viruses under environmental stress and energy crisis.Theory in biosciences = Theorie in den Biowissenschaften · 2026
    Article
  20. Article

150 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Frederik SchulzDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. fschulz@lbl.gov.
Simon RouxDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
David Paez-EspinoDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Sean JungbluthDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
David A WalshGroupe de recherche interuniversitaire en limnologie, Department of Biology, Concordia University, Montréal, Québec, Canada.
Vincent J DenefDepartment of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA.
Katherine D McMahonDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Konstantinos T KonstantinidisSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA, USA.
Emiley A Eloe-FadroshDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Nikos C KyrpidesDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Tanja WoykeDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. twoyke@lbl.gov.
Joint Genome Institute · USLawrence Berkeley National Laboratory · USConcordia University · CAGeorgia Institute of Technology · USUniversity of Michigan–Ann Arbor · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our current knowledge about nucleocytoplasmic large DNA viruses (NCLDVs) is largely derived from viral isolates that are co-cultivated with protists and algae. Here we reconstructed 2,074 NCLDV genomes from sampling sites across the globe by building on the rapidly increasing amount of publicly available metagenome data. This led to an 11-fold increase in phylogenetic diversity and a parallel 10-fold expansion in functional diversity. Analysis of 58,023 major capsid proteins from large and giant viruses using metagenomic data revealed the global distribution patterns and cosmopolitan nature of these viruses. The discovered viral genomes encoded a wide range of proteins with putative roles in photosynthesis and diverse substrate transport processes, indicating that host reprogramming is probably a common strategy in the NCLDVs. Furthermore, inferences of horizontal gene transfer connected viral lineages to diverse eukaryotic hosts. We anticipate that the global diversity of NCLDVs that we describe here will establish giant viruses-which are associated with most major eukaryotic lineages-as important players in ecosystems across Earth's biomes.

Indexed as

BiodiversityMetagenomicsAnimalsCapsid ProteinsDNA VirusesEukaryotic CellsGene Transfer, HorizontalGenome, ViralGiant VirusesHost Microbial InteractionsPhylogenyCapsid Proteins

Identifiers

PMID31968354
PMCPMC7162819
OpenAlexW3002419408

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.