Evidence map›Paper›PMID 31965175›Full record

SynthesisThe Journal of infectious diseases2020

Expanded Spectrum of Antiretroviral-Selected Mutations in Human Immunodeficiency Virus Type 2.

Philip L Tzou, Diane Descamps, Soo-Yon Rhee, Dana N Raugi, Charlotte Charpentier, Nuno Taveira, Robert A Smith, Vicente Soriano, Carmen de Mendoza, Susan P Holmes and 2 more

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in The Journal of infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.4field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Review
  6. Antivirals and Vaccines.International journal of molecular sciences · 2023
    Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Computational Modulation of the V3 Region of Glycoprotein gp125 of HIV-2.International journal of molecular sciences · 2021
    Article
  12. HIV-2 Drug Resistance Genotyping from Dried Blood Spots.Journal of clinical microbiology · 2020
    Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 4 countries.

Philip L TzouDivision of Infectious Diseases, Department of Medicine, Stanford University, Stanford, California, USA.
Diane DescampsLaboratoire de Virologie, Hôpital Bichat-Claude Bernard, APHP.Nord Universite de Paris, France.
Soo-Yon RheeDivision of Infectious Diseases, Department of Medicine, Stanford University, Stanford, California, USA.
Dana N RaugiDepartment of Medicine, University of Washington, Seattle, Washington, USA.
Charlotte CharpentierLaboratoire de Virologie, Hôpital Bichat-Claude Bernard, APHP.Nord Universite de Paris, France.
Nuno TaveiraResearch Institute for Medicines, Faculty of Pharmacy, University of Lisbon, Lisbon, Portugal.
Robert A SmithDepartment of Medicine, University of Washington, Seattle, Washington, USA.
Vicente SorianoHealth Sciences School and Medical Center, Universidad Internacional de La Rioja, Madrid, Spain.
Carmen de MendozaPuerta de Hierro University Hospital and Research Institute, Madrid, Spain.
Susan P HolmesDepartment of Statistics, Stanford University, Stanford, California, USA.
Geoffrey S GottliebDepartment of Medicine, University of Washington, Seattle, Washington, USA.
Robert W ShaferDivision of Infectious Diseases, Department of Medicine, Stanford University, Stanford, California, USA.
Stanford University · USUniversity of Washington · USUniversité Claude Bernard Lyon 1 · FRHospital Universitario Puerta de Hierro Majadahonda · ESUniversidad Internacional De La Rioja · ESUniversity of Lisbon · PT

Funding

Improving Diagnosis, Treatment & Detection of Drug Resistance in HIV-2 InfectionR01AI120765 · NIAID · UNIVERSITY OF WASHINGTON · PI Geoffrey Scott Gottlieb · 2015 to 2026
$8.9M
HIV Drug Resistance DatabaseR24AI136618 · NIAID · STANFORD UNIVERSITY · PI ROBERT William SHAFER · 2018 to 2026
$7.3M
Antiretroviral Therapy for HIV-2 Infection in SenegalR01AI060466 · NIAID · UNIVERSITY OF WASHINGTON · PI GOTTLIEB, GEOFFREY SCOTT · 2005 to 2014
$6.5M
NIAID NIH HHS R01 AI060466NIAID NIH HHS R01 AI120765NIAID NIH HHS R24 AI136618
6 · The paper itself

Abstract

backgroundHIV-1 and HIV-2 differ in their antiretroviral (ARV) susceptibilities and drug resistance mutations (DRMs).

methodsWe analyzed published HIV-2 pol sequences to identify HIV-2 treatment-selected mutations (TSMs). Mutation prevalences were determined by HIV-2 group and ARV status. Nonpolymorphic mutations were those in <1% of ARV-naive persons. TSMs were those associated with ARV therapy after multiple comparisons adjustment.

resultsWe analyzed protease (PR) sequences from 483 PR inhibitor (PI)-naive and 232 PI-treated persons; RT sequences from 333 nucleoside RT inhibitor (NRTI)-naive and 252 NRTI-treated persons; and integrase (IN) sequences from 236 IN inhibitor (INSTI)-naive and 60 INSTI-treated persons. In PR, 12 nonpolymorphic TSMs occurred in ≥11 persons: V33I, K45R, V47A, I50V, I54M, T56V, V62A, A73G, I82F, I84V, F85L, L90M. In RT, 9 nonpolymorphic TSMs occurred in ≥10 persons: K40R, A62V, K70R, Y115F, Q151M, M184VI, S215Y. In IN, 11 nonpolymorphic TSMs occurred in ≥4 persons: Q91R, E92AQ, T97A, G140S, Y143G, Q148R, A153G, N155H, H156R, R231 5-amino acid insertions. Nine of 32 nonpolymorphic TSMs were previously unreported.

conclusionsThis meta-analysis confirmed the ARV association of previously reported HIV-2 DRMs and identified novel TSMs. Genotypic and phenotypic studies of HIV-2 TSMs will improve approaches to predicting HIV-2 ARV susceptibility and treating HIV-2-infected persons.

Indexed as

Amino Acid SubstitutionDrug Resistance, ViralHIV-2HIV InfectionsHIV ProteaseHIV Protease InhibitorsHIV Reverse TranscriptaseHumansMutationHIV ProteaseHIV Protease InhibitorsHIV Reverse Transcriptasedrug resistanceHIV-2integrase strand transfer inhibitorsmutationsnucleoside RT inhibitorsprotease inhibitors

Identifiers

PMID31965175
PMCPMC7289557
OpenAlexW3001432772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.