Evidence map›Paper›PMID 31965003›Full record

ArticleScientific reports2020

Integrated miRNA-/mRNA-Seq of the Habenulo-Interpeduncular Circuit During Acute Nicotine Withdrawal.

Alison P Casserly, Junko Tsuji, Rubing Zhao-Shea, Ciearra B Smith, Susanna Molas, Andrew R Tapper, Zhiping Weng, Paul D Gardner

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. The role of miRNA-144-3p/Oprk1/KOR in nicotine dependence and nicotine withdrawal in male rats.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2023
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Midbrain circuits of novelty processing.Neurobiology of learning and memory · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Alison P CasserlyBrudnick Neuropsychiatric Research Institute, Department of Neurobiology, University of Massachusetts Medical School, Massachusetts, USA.
Junko TsujiProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Massachusetts, USA.ORCID http://orcid.org/0000-0003-0139-3750
Rubing Zhao-SheaBrudnick Neuropsychiatric Research Institute, Department of Neurobiology, University of Massachusetts Medical School, Massachusetts, USA.
Ciearra B SmithBrudnick Neuropsychiatric Research Institute, Department of Neurobiology, University of Massachusetts Medical School, Massachusetts, USA.
Susanna MolasBrudnick Neuropsychiatric Research Institute, Department of Neurobiology, University of Massachusetts Medical School, Massachusetts, USA.
Andrew R TapperBrudnick Neuropsychiatric Research Institute, Department of Neurobiology, University of Massachusetts Medical School, Massachusetts, USA.ORCID http://orcid.org/0000-0002-8358-6937
Zhiping WengProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Massachusetts, USA.ORCID http://orcid.org/0000-0002-3032-7966
Paul D GardnerBrudnick Neuropsychiatric Research Institute, Department of Neurobiology, University of Massachusetts Medical School, Massachusetts, USA. paul.gardner@umassmed.edu.
University of Massachusetts Chan Medical School · US

Funding

EDAC: ENCODE Data Analysis CenterU24HG009446 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GERSTEIN, MARK BENDER, WENG, ZHIPING · 2017 to 2022
$10.4M
microRNA Regulation of the Nicotine Dependence Susceptibility Locus CHRNA5/A3/B4R21DA033543 · NIDA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GARDNER, PAUL D · 2013 to 2014
$458k
MicroRNA Regulation of Nicotine-Mediated BehaviorsR21DA031952 · NIDA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GARDNER, PAUL D, TAPPER, ANDREW R · 2012 to 2013
$443k
Modulation of Nicotine Reward-Associated Behaviors by MicroRNAsF30DA036312 · NIDA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CASSERLY, ALISON PATRICE · 2014 to 2016
$98k
NHGRI NIH HHS U24 HG009446NIDA NIH HHS F30 DA036312NIDA NIH HHS R21 DA031952NIDA NIH HHS R21 DA033543
6 · The paper itself

Abstract

Tobacco use is the leading preventable cause of mortality in the world. The limited number of smoking cessation aids currently available are minimally effective, highlighting the need for novel therapeutic interventions. We describe a genome-wide approach to identify potential candidates for such interventions. Next-generation sequencing was performed using RNA isolated from the habenulo-interpeduncular circuit of male mice withdrawn from chronic nicotine treatment. This circuit plays a central role in the nicotine withdrawal response. Differentially expressed miRNAs and mRNAs were validated using RT-qPCR. Many of the differentially expressed mRNAs are predicted targets of reciprocally expressed miRNAs. We illustrate the utility of the dataset by demonstrating that knockdown in the interpeduncular nucleus of a differentially expressed mRNA, that encoding profilin 2, is sufficient to induce anxiety-related behavior. Importantly, profilin 2 knockdown in the ventral tegmental area did not affect anxiety behavior. Our data reveal wide-spread changes in gene expression within the habenulo-interpeduncular circuit during nicotine withdrawal. This dataset should prove to be a valuable resource leading to the identification of substrates for the design of innovative smoking cessation aids.

Indexed as

NicotineAnimalsAnxietyGene Expression ProfilingGene Knockdown TechniquesHabenulaInterpeduncular NucleusMaleMice, Inbred C57BLMicroRNAsProfilinsRNA, MessengerSubstance Withdrawal SyndromeMicroRNAsNicotinePfn2 protein, mouseProfilinsRNA, Messenger

Identifiers

PMID31965003
PMCPMC6972841
OpenAlexW3006627741

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.