Evidence map›Paper›PMID 31964960›Full record

ArticleScientific reports2020

Design Strategy to Create Antibody Mimetics Harbouring Immobilised Complementarity Determining Region Peptides for Practical Use.

Tetsuya Kadonosono, Wanaporn Yimchuen, Yumi Ota, Kyra See, Tadaomi Furuta, Tadashi Shiozawa, Maika Kitazawa, Yu Goto, Akash Patil, Takahiro Kuchimaru and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Tetsuya KadonosonoSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan.
Wanaporn YimchuenSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan.
Yumi OtaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan.
Kyra SeeSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan.
Tadaomi FurutaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan.ORCID http://orcid.org/0000-0003-4568-9043
Tadashi ShiozawaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan.
Maika KitazawaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan.
Yu GotoSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan.
Akash PatilSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan.
Takahiro KuchimaruCenter for Molecular Medicine, Jichi Medical University, Shimotsuke, 329-0498, Japan.ORCID http://orcid.org/0000-0002-5355-3165
Shinae Kizaka-KondohSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan. skondoh@bio.titech.ac.jp.ORCID http://orcid.org/0000-0003-3085-5782
Tokyo Institute of Technology · JPJichi Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Monoclonal antibodies (mAbs) are attractive therapeutics for treating a wide range of human disorders, and bind to the antigen through their complementarity-determining regions (CDRs). Small stable proteins containing structurally retained CDRs are promising alternatives to mAbs. In this report, we present a method to create such proteins, named fluctuation-regulated affinity proteins (FLAPs). Thirteen graft acceptor (GA) sites that efficiently immobilise the grafted peptide structure were initially selected from six small protein scaffolds by computational identification. Five CDR peptides extracted by binding energy calculations from mAbs against breast cancer marker human epithelial growth factor receptor type 2 (HER2) were then grafted to the selected scaffolds. The combination of five CDR peptides and 13 GA sites in six scaffolds revealed that three of the 65 combinations showed specific binding to HER2 with dissociation constants (K

Indexed as

Antibodies, MonoclonalAntibodies, Monoclonal, HumanizedAntigensCell Line, TumorComplementarity Determining RegionsDrug DesignEpitopesErb-b2 Receptor Tyrosine KinasesHeLa CellsHumansMolecular Dynamics SimulationProtein EngineeringRecombinant ProteinsReproducibility of ResultsStomach NeoplasmsTrastuzumabAntibodies, MonoclonalAntibodies, Monoclonal, HumanizedAntigensComplementarity Determining RegionsEpitopesERBB2 protein, humanErb-b2 Receptor Tyrosine KinasespertuzumabRecombinant ProteinsTrastuzumab

Identifiers

PMID31964960
PMCPMC6972867
OpenAlexW3000858851

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.