ArticleScientific data2020
Four high-quality draft genome assemblies of the marine heterotrophic nanoflagellate Cafeteria roenbergensis.
Article in Scientific data, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17 citing papers in PubMed, 28 citations in OpenAlex.
- Eukaryotic metagenome-assembled genomes recovered from deep metagenomic sequencing of the seagrass,Microbial genomics · 2026Article
- Observing grazing behavior transitions in Cafeteria roenbergensis with video-rate two-photon microscopy.Journal of biological physics · 2025Article
- Metagenomics of the MAST-3 stramenopile,Microbial genomics · 2025Article
- Contiguous and complete assemblies ofGenome research · 2025Article
- Endogenous virophages are active and mitigate giant virus infection in the marine protistProceedings of the National Academy of Sciences of the United States of America · 2024Article
- Integrated overview of stramenopile ecology, taxonomy, and heterotrophic origin.The ISME journal · 2024Review
- Updated Virophage Taxonomy and Distinction from Polinton-like Viruses.Biomolecules · 2023Article
- Membrane-anchored calpains - hidden regulators of growth and development beyond plants?Frontiers in plant science · 2023Article
- Crystal structures of FNIP/FGxxFN motif-containing leucine-rich repeat proteins.Scientific reports · 2022Article
- Draft Genome Sequence of the Freshwater Diatom Fragilaria crotonensis SAG 28.96.Microbiology resource announcements · 2022Article
- Article
- Niche adaptation promoted the evolutionary diversification of tiny ocean predators.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate.The ISME journal · 2021Article
- Emerging Diversity of Channelrhodopsins and Their Structure-Function Relationships.Frontiers in cellular neuroscience · 2021Review
- MOSGA 2: Comparative genomics and validation tools.Computational and structural biotechnology journal · 2021Article
- Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC.Genome biology · 2020Article
- Polycystic Kidney Disease Ryanodine Receptor Domain (PKDRR) Proteins in Oomycetes.Pathogens (Basel, Switzerland) · 2020Article
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Authors and funding
6 authors at 2 institutions in 2 countries.
Funding
Abstract
The heterotrophic stramenopile Cafeteria roenbergensis is a globally distributed marine bacterivorous protist. This unicellular flagellate is host to the giant DNA virus CroV and the virophage mavirus. We sequenced the genomes of four cultured C. roenbergensis strains and generated 23.53 Gb of Illumina MiSeq data (99-282 × coverage per strain) and 5.09 Gb of PacBio RSII data (13-45 × coverage). Using the Canu assembler and customized curation procedures, we obtained high-quality draft genome assemblies with a total length of 34-36 Mbp per strain and contig N50 lengths of 148 kbp to 464 kbp. The C. roenbergensis genome has a GC content of ~70%, a repeat content of ~28%, and is predicted to contain approximately 7857-8483 protein-coding genes based on a combination of de novo, homology-based and transcriptome-supported annotation. These first high-quality genome assemblies of a bicosoecid fill an important gap in sequenced stramenopile representatives and enable a more detailed evolutionary analysis of heterotrophic protists.
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