ArticleNature communications2020
Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus.
Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
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Who cites it
42 citing papers in PubMed.
- A novel resistance locus from an unexploited East Asian Vitis coignetiae confers resistance to grapevine downy mildew.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Dissecting the genetic basis of relevant fruit quality traits in interspecific grapevines (Horticulture research · 2026Article
- Next-Generation Genotyping: Innovations Driving Plant Genomic Improvement.Life (Basel, Switzerland) · 2026Review
- Two noir juice color-associated markers identified from a 'Chambourcin'-based population demonstrate broad applicability acrossFrontiers in plant science · 2026Article
- An advanced genotyping tool to inspect grapevine variability: the AxiomFrontiers in plant science · 2026Article
- Next-generation T cell immunotherapies engineered with CRISPR base and prime editing: challenges and opportunities.Nature reviews. Clinical oncology · 2025Review
- Phased epigenomics and methylation inheritance in a historical Vitis vinifera hybrid.Genome biology · 2025Article
- Integrating Dense Genotyping with High-Throughput Phenotyping Empowers the Genetic Dissection of Berry Quality and Resilience Traits in Grapevine.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025Article
- Mapping and identification of QTLs for low light tolerance traits in grapevine.BMC plant biology · 2025Article
- The genome ofHorticulture research · 2025Article
- Identifying Candidate Genes for Grape (Journal of agricultural and food chemistry · 2025Article
- Genetic regulation of leaf morphology in own-rooted and grafted vines of an F1 rootstock population.Frontiers in plant science · 2025Article
- The assembly and annotation of two teinturier grapevine varieties, Dakapo and Rubired.GigaByte (Hong Kong, China) · 2025Article
- Development and Applications of Somatic Embryogenesis in Grapevine (Plants (Basel, Switzerland) · 2024Review
- Article
- A Sustainable Strategy for Marker-Assisted Selection (MAS) Applied in Grapevine (Plants (Basel, Switzerland) · 2024Article
- Biography ofHorticulture research · 2024Article
- A super-pangenome of the North American wild grape species.Genome biology · 2023Article
- Basic leucine zipper geneHorticulture research · 2023Article
- Multigenic resistance to Xylella fastidiosa in wild grapes (Vitis sps.) and its implications within a changing climate.Communications biology · 2023Article
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Authors and funding
19 authors.
Funding
Abstract
Transferable DNA markers are essential for breeding and genetics. Grapevine (Vitis) breeders utilize disease resistance alleles from congeneric species ~20 million years divergent, but existing Vitis marker platforms have cross-species transfer rates as low as 2%. Here, we apply a marker strategy targeting the inferred Vitis core genome. Incorporating seven linked-read de novo assemblies and three existing assemblies, the Vitis collinear core genome is estimated to converge at 39.8 Mb (8.67% of the genome). Adding shotgun genome sequences from 40 accessions enables identification of conserved core PCR primer binding sites flanking polymorphic haplotypes with high information content. From these target regions, we develop 2,000 rhAmpSeq markers as a PCR multiplex and validate the panel in four biparental populations spanning the diversity of the Vitis genus, showing transferability increases to 91.9%. This marker development strategy should be widely applicable for genetic studies in many taxa, particularly those ~20 million years divergent.
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