Evidence map›Paper›PMID 31962158›Full record

ArticleJournal of structural biology2020

A cryo-tomography-based volumetric model of the actin core of mouse vestibular hair cell stereocilia lacking plastin 1.

Junha Song, Roma Patterson, Zoltan Metlagel, Jocelyn F Krey, Samantha Hao, Linshanshan Wang, Brian Ng, Salim Sazzed, Julio Kovacs, Willy Wriggers and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of structural biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Tracing Randomly Oriented Filaments in a Simulated Actin Network Tomogram.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Tracing Filaments in Simulated 3D Cryo-Electron Tomography Maps Using a Fast Dynamic Programming Algorithm.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2021
    Article
  11. Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2021
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Junha SongMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Roma PattersonMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Zoltan MetlagelMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Jocelyn F KreyOregon Hearing Research Center & Vollum Institute, Oregon Health & Science University, Portland, OR, USA.
Samantha HaoMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Linshanshan WangMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Brian NgMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Salim SazzedDepartment of Computer Science, Old Dominion University, Norfolk, VA, USA.
Julio KovacsDepartment of Mechanical and Aerospace Engineering, Old Dominion University, Norfolk, VA, USA.
Willy WriggersDepartment of Mechanical and Aerospace Engineering, Old Dominion University, Norfolk, VA, USA.
Jing HeDepartment of Computer Science, Old Dominion University, Norfolk, VA, USA.
Peter G Barr-GillespieOregon Hearing Research Center & Vollum Institute, Oregon Health & Science University, Portland, OR, USA. Electronic address: gillespp@ohsu.edu.
Manfred AuerMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. Electronic address: mauer@lbl.gov.
Lawrence Berkeley National Laboratory · USOld Dominion University · USOregon Health & Science University · US

Funding

TUBULIN STRUCTURE BY ELECTRON CRYSTALLOGRAPHYP01GM051487 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CATE, JAMIE H · 1994 to 2018
$27.6M
Hair Bundle Structure and DynamicsR01DC011034 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI BARR-GILLESPIE, PETER GORDON · 2010 to 2024
$6.4M
Multi-Resolution Docking Methods for Electron MicroscopyR01GM062968 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI WRIGGERS, WILLY R · 2001 to 2023
$4.8M
NIDCD NIH HHS R01 DC011034NIGMS NIH HHS P01 GM051487NIGMS NIH HHS R01 GM062968
6 · The paper itself

Abstract

Electron cryo-tomography allows for high-resolution imaging of stereocilia in their native state. Because their actin filaments have a higher degree of order, we imaged stereocilia from mice lacking the actin crosslinker plastin 1 (PLS1). We found that while stereocilia actin filaments run 13 nm apart in parallel for long distances, there were gaps of significant size that were stochastically distributed throughout the actin core. Actin crosslinkers were distributed through the stereocilium, but did not occupy all possible binding sites. At stereocilia tips, protein density extended beyond actin filaments, especially on the side of the tip where a tip link is expected to anchor. Along the shaft, repeating density was observed that corresponds to actin-to-membrane connectors. In the taper region, most actin filaments terminated near the plasma membrane. The remaining filaments twisted together to make a tighter bundle than was present in the shaft region; the spacing between them decreased from 13 nm to 9 nm, and the apparent filament diameter decreased from 6.4 to 4.8 nm. Our models illustrate detailed features of distinct structural domains that are present within the stereocilium.

Indexed as

Actin CytoskeletonActinsAnimalsElectron Microscope TomographyHair Cells, VestibularMembrane GlycoproteinsMiceMicrofilament ProteinsActinsMembrane GlycoproteinsMicrofilament ProteinsplastinActinCryo-electron microscopyHair cellStereociliaVolumetric model

Identifiers

PMID31962158
PMCPMC7067663
OpenAlexW2999706190

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.