Evidence map›Paper›PMID 31962012›Full record

ArticleMolecular genetics & genomic medicine2020

Analysis of variants in GATA4 and FOG2/ZFPM2 demonstrates benign contribution to 46,XY disorders of sex development.

Jocelyn A van den Bergen, Gorjana Robevska, Stefanie Eggers, Stefan Riedl, Sonia R Grover, Philip B Bergman, Chris Kimber, Ashish Jiwane, Sophy Khan, Csilla Krausz and 8 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Lessons Learned from 17 Years of Multidisciplinary Care for Differences of Sex Development Patients at a Single Indonesian Center.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2023
    Article
  7. Factors within the Developing Embryo and Ovarian Microenvironment That Influence Primordial Germ Cell Fate.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2023
    Review
  8. Journal of clinical research in pediatric endocrinology · 2022
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Variants ofInternational journal of molecular sciences · 2020
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 13 institutions in 7 countries.

Jocelyn A van den BergenGenetics, Murdoch Children's Research Institute, Parkville, Vic., Australia.
Gorjana RobevskaGenetics, Murdoch Children's Research Institute, Parkville, Vic., Australia.
Stefanie EggersResearch Genomics, Murdoch Children's Research Institute, Parkville, Vic., Australia.
Stefan RiedlSt. Anna Children's Hospital, Medical University of Vienna, Vienna, Austria.
Sonia R GroverGenetics, Murdoch Children's Research Institute, Parkville, Vic., Australia.
Philip B BergmanDepartment of Paediatric Endocrinology and Diabetes, Monash Children's Hospital, Clayton, Vic., Australia.
Chris KimberDepartment of Paediatric Urology, Monash Children's Hospital, Clayton, Vic., Australia.
Ashish JiwaneDepartment of Urology, Sydney Children's Hospital Randwick, Randwick, NSW, Australia.
Sophy KhanSurgical Department, Angkor Hospital for Children, Siem Reap, Cambodia.
Csilla KrauszDepartment of Experimental and Clinical Biomedical Sciences"Mario Serio", University of Florence, Firenze, Toscana, Italy.
Jamal RazaPaediatric Department, National Institute of Child Health, Karachi City, Sindh, Pakistan.
Irum AttaPaediatric Department, National Institute of Child Health, Karachi City, Sindh, Pakistan.
Susan R DavisWomen's Health Research Program, School of Public Health and Preventive Medicine, Monash University, Melbourne, Vic., Australia.
Makato OnoDepartment of Paediatrics, Tokyo Bay Urayasu Ichikawa Iryo Center, Urayasu, Chiba, Japan.
Vincent HarleyCentre for Endocrinology and Metabolism, Hudson Institute of Medical Research, Clayton, Vic., Australia.
Sultana M H FaradzDivision of Human Genetics, Centre for Biomedical Research Faculty of Medicine, Diponegoro University (FMDU), Semarang, Indonesia.
Andrew H SinclairGenetics, Murdoch Children's Research Institute, Parkville, Vic., Australia.
Katie L AyersGenetics, Murdoch Children's Research Institute, Parkville, Vic., Australia.ORCID 0000-0002-6840-3186
Murdoch Children's Research Institute · AUMonash Children’s Hospital · AUNational Institute of Child Health · PKThe University of Melbourne · AUAngkor Hospital for Children · KHDiponegoro University · IDHudson Institute of Medical Research · AUJuntendo University Urayasu Hospital · JPMonash University · AURoyal Children's Hospital · AUSt Anna Children's Hospital · ATSydney Children's Hospital · AUUniversity of Florence · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGATA-binding protein 4 (GATA4) and Friend of GATA 2 protein (FOG2, also known as ZFPM2) form a heterodimer complex that has been shown to influence transcription of genes in a number of developmental systems. Recent evidence has also shown these genes play a role in gonadal sexual differentiation in humans. Previously we identified four variants in GATA4 and an unexpectedly large number of variants in ZFPM2 in a cohort of individuals with 46,XY Differences/Disorders of Sex Development (DSD) (Eggers et al, Genome Biology, 2016; 17: 243).

methodHere, we review variant curation and test the functional activity of GATA4 and ZFPM2 variants. We assess variant transcriptional activity on gonadal specific promoters (Sox9 and AMH) and variant protein-protein interactions.

resultsOur findings support that the majority of GATA4 and ZFPM2 variants we identified are benign in their contribution to 46,XY DSD. Indeed, only one variant, in the conserved N-terminal zinc finger of GATA4, was considered pathogenic, with functional analysis confirming differences in its ability to regulate Sox9 and AMH and in protein interaction with ZFPM2.

conclusionsOur study helps define the genetic factors contributing to 46,XY DSD and suggests that the majority of variants we identified in GATA4 and ZFPM2/FOG2 are not causative.

Indexed as

MutationPhenotypeDisorder of Sex Development, 46,XYDNA-Binding ProteinsGATA4 Transcription FactorHEK293 CellsHumansPromoter Regions, GeneticProtein BindingTranscription FactorsZinc FingersDNA-Binding ProteinsGATA4 protein, humanGATA4 Transcription FactorTranscription FactorsZFPM2 protein, humandisorders of sexual developmentFOG2functional analysisGATA4mutationsZFPM2

Identifiers

PMID31962012
PMCPMC7057099
OpenAlexW3002166166

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.