Evidence map›Paper›PMID 31961934›Full record

ArticleBlood2020

Rare and private spliceosomal gene mutations drive partial, complete, and dual phenocopies of hotspot alterations.

Joseph Pangallo, Jean-Jacques Kiladjian, Bruno Cassinat, Aline Renneville, Justin Taylor, Jacob T Polaski, Khrystyna North, Omar Abdel-Wahab, Robert K Bradley

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. U2af1Leukemia · 2026
    Article
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  7. Review
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  16. Animals : an open access journal from MDPI · 2022
    Article
  17. RNA-binding proteins of COSMIC importance in cancer.The Journal of clinical investigation · 2021
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Joseph PangalloComputational Biology Program, Public Health Sciences Division, and.
Jean-Jacques KiladjianAssistance Publique-Hôpitaux de Paris and INSERM Unité Mixte de Recherche en Santé 1131, Institut Universitaire d'Hématologie, Hôpital Saint-Louis, Paris, France.
Bruno CassinatAssistance Publique-Hôpitaux de Paris and INSERM Unité Mixte de Recherche en Santé 1131, Institut Universitaire d'Hématologie, Hôpital Saint-Louis, Paris, France.
Aline RennevilleHematology Laboratory, Biology and Pathology Center, Centre Hospitalier Universitaire, Lille, France; University of Lille Nord de France, Lille, France; UMR-S 1172, Team 3, Cancer Research Institute of Lille, Lille, France.
Justin TaylorHuman Oncology and Pathogenesis Program and Leukemia Service, Memorial Sloan Kettering Cancer Center, New York, NY; and.
Jacob T PolaskiComputational Biology Program, Public Health Sciences Division, and.
Khrystyna NorthComputational Biology Program, Public Health Sciences Division, and.
Omar Abdel-WahabHuman Oncology and Pathogenesis Program and Leukemia Service, Memorial Sloan Kettering Cancer Center, New York, NY; and.
Robert K BradleyComputational Biology Program, Public Health Sciences Division, and.
Fred Hutch Cancer Center · USAssistance Publique – Hôpitaux de Paris · FRMemorial Sloan Kettering Cancer Center · USUniversité Lille Nord de France · FR

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
Genetic and molecular basis for SRSF2 mutations in myelodysplasiaR01HL128239 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Omar Abdel-Wahab, Robert K Bradley · 2015 to 2026
$8.0M
U2AF1 mutations in myelodysplastic syndromes: from mechanism to therapyR01DK103854 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRADLEY, ROBERT K · 2016 to 2019
$1.5M
Defining the Biological and Mechanistic Implications of XPO1 Mutations in Hematologic MalignanciesK08CA230319 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI TAYLOR, JUSTIN · 2018 to 2023
$1.2M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
NCI NIH HHS K08 CA230319NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA015704NHLBI NIH HHS R01 HL128239NIDDK NIH HHS R01 DK103854NIH HHS S10 OD020069
6 · The paper itself

Abstract

Genes encoding the RNA splicing factors SF3B1, SRSF2, and U2AF1 are subject to frequent missense mutations in clonal hematopoiesis and diverse neoplastic diseases. Most "spliceosomal" mutations affect specific hotspot residues, resulting in splicing changes that promote disease pathophysiology. However, a subset of patients carries spliceosomal mutations that affect non-hotspot residues, whose potential functional contributions to disease are unstudied. Here, we undertook a systematic characterization of diverse rare and private spliceosomal mutations to infer their likely disease relevance. We used isogenic cell lines and primary patient materials to discover that 11 of 14 studied rare and private mutations in SRSF2 and U2AF1 induced distinct splicing alterations, including partially or completely phenocopying the alterations in exon and splice site recognition induced by hotspot mutations or driving "dual" phenocopies that mimicked 2 co-occurring hotspot mutations. Our data suggest that many rare and private spliceosomal mutations contribute to disease pathogenesis and illustrate the utility of molecular assays to inform precision medicine by inferring the potential disease relevance of newly discovered mutations.

Indexed as

Genetic Association StudiesMutationPenetrancePhenotypeCell Line, TumorComputational BiologyExonsGene Expression ProfilingHumansRNA Splice SitesRNA SplicingRNA Splicing FactorsSpliceosomesTranscriptomeRNA Splice SitesRNA Splicing Factors

Identifiers

PMID31961934
PMCPMC7099330
OpenAlexW3002068660

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.