Evidence map›Paper›PMID 31961855›Full record

ArticlePLoS genetics2020

The conserved transcriptional regulator CdnL is required for metabolic homeostasis and morphogenesis in Caulobacter.

Selamawit Abi Woldemeskel, Allison K Daitch, Laura Alvarez, Gaël Panis, Rilee Zeinert, Diego Gonzalez, Erika Smith, Justine Collier, Peter Chien, Felipe Cava and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

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  13. The DUF1013 protein TrcR tracks with RNA polymerase to control the bacterial cell cycle and protect against antibiotics.Proceedings of the National Academy of Sciences of the United States of America · 2021
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  14. A majority ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Article
  16. CarD contributes to diverse gene expression outcomes throughout the genome ofProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Selamawit Abi WoldemeskelDepartment of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
Allison K DaitchDepartment of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.ORCID 0000-0003-3409-2217
Laura AlvarezDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
Gaël PanisDepartment of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Rilee ZeinertDepartment of Biochemistry and Molecular Biology, University of Massachusetts-Amherst, MA, United States of America.
Diego GonzalezDepartment of Fundamental Microbiology, Faculty of Biology and Medicine, University of Lausanne, Switzerland.
Erika SmithDepartment of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.ORCID 0000-0003-2665-3408
Justine CollierDepartment of Fundamental Microbiology, Faculty of Biology and Medicine, University of Lausanne, Switzerland.
Peter ChienDepartment of Biochemistry and Molecular Biology, University of Massachusetts-Amherst, MA, United States of America.ORCID 0000-0001-6733-1478
Felipe CavaDepartment of Molecular Biology, Umeå University, Umeå, Sweden.ORCID 0000-0001-5995-718X
Patrick H ViollierDepartment of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Erin D GoleyDepartment of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.ORCID 0000-0002-8518-2303
Johns Hopkins University · USUmeå University · SEUniversity of Geneva · CHUniversity of Lausanne · CHUniversity of Massachusetts Amherst · US

Funding

BIOCHEMISTRY, CELLULAR AND MOLECULAR BIOLOGY PROGRAMT32GM007445 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREEN, RACHEL · 1985 to 2021
$24.1M
CHEMISTRY-BIOLOGY INTERFACE PREDOCTORAL TRAINING GRANTST32GM008515 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI THOMPSON, LYNMARIE K. · 1995 to 2020
$4.3M
Regulated Proteolysisin Bacteria Development and Stress ResponseR35GM130320 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI Peter Chien · 2019 to 2026
$3.4M
Stress related proteases in Caulobacter crescentusR01GM111706 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI CHIEN, PETER · 2014 to 2018
$1.6M
Regulation and Mechanism of the C. Crescentus Cytokinetic RingR01GM108640 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GOLEY, ERIN D · 2015 to 2019
$1.6M
NIGMS NIH HHS R01 GM108640NIGMS NIH HHS R01 GM111706NIGMS NIH HHS R35 GM130320NIGMS NIH HHS T32 GM007445NIGMS NIH HHS T32 GM008515
6 · The paper itself

Abstract

Bacterial growth and division require regulated synthesis of the macromolecules used to expand and replicate components of the cell. Transcription of housekeeping genes required for metabolic homeostasis and cell proliferation is guided by the sigma factor σ70. The conserved CarD-like transcriptional regulator, CdnL, associates with promoter regions where σ70 localizes and stabilizes the open promoter complex. However, the contributions of CdnL to metabolic homeostasis and bacterial physiology are not well understood. Here, we show that Caulobacter crescentus cells lacking CdnL have severe morphological and growth defects. Specifically, ΔcdnL cells grow slowly in both rich and defined media, and are wider, more curved, and have shorter stalks than WT cells. These defects arise from transcriptional downregulation of most major classes of biosynthetic genes, leading to significant decreases in the levels of critical metabolites, including pyruvate, α-ketoglutarate, ATP, NAD+, UDP-N-acetyl-glucosamine, lipid II, and purine and pyrimidine precursors. Notably, we find that ΔcdnL cells are glutamate auxotrophs, and ΔcdnL is synthetic lethal with other genetic perturbations that limit glutamate synthesis and lipid II production. Our findings implicate CdnL as a direct and indirect regulator of genes required for metabolic homeostasis that impacts morphogenesis through availability of lipid II and other metabolites.

Indexed as

HomeostasisBacterial ProteinsCaulobacter crescentusCell DivisionConserved SequenceMetabolomeTranscription FactorsBacterial ProteinsTranscription Factors

Identifiers

PMID31961855
PMCPMC6994171
OpenAlexW3001486028

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.