Evidence map›Paper›PMID 31960993›Full record

ArticleChembiochem : a European journal of chemical biology2020

Terminal Alkynes as Raman Probes of α-Synuclein in Solution and in Cells.

Jessica D Flynn, Megan Y Gimmen, Dexter N Dean, Shannon M Lacy, Jennifer C Lee

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Expanding the methionine toolkit:bioRxiv : the preprint server for biology · 2026
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  11. Raman spectral imaging ofBiophysical chemistry · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jessica D FlynnNational Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID 0000-0002-9310-4882
Megan Y GimmenNational Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Dexter N DeanNational Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID 0000-0002-2279-3393
Shannon M LacyNational Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Jennifer C LeeNational Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID 0000-0003-0506-8349
National Institutes of Health · US

Funding

EXITO: Enhancing Cross-disciplinary Infrastructure and Training at OregonUL1GM118964 · NIGMS · PORTLAND STATE UNIVERSITY · PI KELLER, THOMAS E · 2015 to 2023
$18.0M
EXITO: Enhancing Cross-disciplinary Infrastructure and Training at OregonRL5GM118963 · NIGMS · PORTLAND STATE UNIVERSITY · PI KELLER, THOMAS E · 2015 to 2023
$11.9M
Raman Spectroscopic Studies of AmyloidsZIAHL006236 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI LEE, JENNIFER · 2018 to 2025
$5.5M
Intramural NIH HHS ZIA HL006236NIGMS NIH HHS RL5 GM118963NIGMS NIH HHS UL1 GM118964
6 · The paper itself

Abstract

Conformational changes in α-synuclein (α-syn) are central to its biological function and Parkinson's disease pathology. Here, terminal alkynes (homopropargylglycine) were employed as environmentally sensitive Raman probes at residues 1, 5, 116, and 127 to characterize soluble (disordered), micelle-bound (α-helical), and fibrillar (β-sheet) α-syn. Along with the full-length protein, a disease-related C-terminal truncation (1-115) was also studied. For the first time, β-sheet α-syn amyloid structure was detected by the amide-I band in N27 dopaminergic rat cells, where a reciprocal relationship between levels of fibrils and lipids was seen. Site-specific spectral features of the terminal alkynes also revealed the heterogeneity of the cellular environment. This work shows the versatility of Raman microspectroscopy and the power of unnatural amino acids in providing structural and residue-level insights in solution and in cells.

Indexed as

Sequence DeletionAlkynesalpha-SynucleinAmyloidAnimalsCell LineCloning, MolecularDopaminergic NeuronsEscherichia coliGene ExpressionGenetic VectorsGlycineHumansHydrophobic and Hydrophilic InteractionsLysophosphatidylcholinesMicellesAlkynesalpha-SynucleinAmyloidGlycinehomopropargylglycineLysophosphatidylcholinesMicellesMolecular ProbesRecombinant ProteinsamyloidsC-terminal truncationshomopropargylglycineParkinson's diseaseRaman spectroscopy

Identifiers

PMID31960993
PMCPMC7269816
OpenAlexW3003031709

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.